Bump the all-dependencies group with 3 updates

[dependabot]

Bumps the all-dependencies group with 3 updates: bioregistry, charset-normalizer and pymdown-extensions.

Updates bioregistry from 0.11.29 to 0.11.30

Commits

• d4da3cb Bump version: 0.11.30-dev → 0.11.30
• 4f3b701 📮 Automatically update
• 201bf59 🫀Health Report
• fc11d29 Bump version: 0.11.29 → 0.11.30-dev
• See full diff in compare view

Updates charset-normalizer from 3.4.0 to 3.4.1

Release notes

Sourced from charset-normalizer's releases.

Version 3.4.1

🚀 We're still raising awareness around HTTP/2, and HTTP/3!

Did you know that Internet Explorer 11 shipped with an optional HTTP/2 support back in 2013? also libcurl did ship it in 2014[...] Using Requests today is the rough equivalent of using EOL Windows 8! We promptly invite Python developers to look at the first drop-in replacement for Requests, namely Niquests. Ship with native WebSocket, SSE, Happy Eyeballs, DNS over HTTPS, and so on[...] All of this while remaining compatible with all Requests prior plug-ins / add-ons.

It leverages charset-normalizer in a better way! Check it out, you will gain up to being 3X faster and get a real/respectable support with it.

3.4.1 (2024-12-24)

Changed

• Project metadata are now stored using pyproject.toml instead of setup.cfg using setuptools as the build backend.
• Enforce annotation delayed loading for a simpler and consistent types in the project.
• Optional mypyc compilation upgraded to version 1.14 for Python >= 3.8

Added

• pre-commit configuration.
• noxfile.

Removed

• build-requirements.txt as per using pyproject.toml native build configuration.
• bin/integration.py and bin/serve.py in favor of downstream integration test (see noxfile).
• setup.cfg in favor of pyproject.toml metadata configuration.
• Unused utils.range_scan function.

Fixed

• Converting content to Unicode bytes may insert utf_8 instead of preferred utf-8. (#572)
• Deprecation warning "'count' is passed as positional argument" when converting to Unicode bytes on Python 3.13+

Changelog

Sourced from charset-normalizer's changelog.

3.4.1 (2024-12-24)

Changed

• Project metadata are now stored using pyproject.toml instead of setup.cfg using setuptools as the build backend.
• Enforce annotation delayed loading for a simpler and consistent types in the project.
• Optional mypyc compilation upgraded to version 1.14 for Python >= 3.8

Added

• pre-commit configuration.
• noxfile.

Removed

• build-requirements.txt as per using pyproject.toml native build configuration.
• bin/integration.py and bin/serve.py in favor of downstream integration test (see noxfile).
• setup.cfg in favor of pyproject.toml metadata configuration.
• Unused utils.range_scan function.

Fixed

• Converting content to Unicode bytes may insert utf_8 instead of preferred utf-8. (#572)
• Deprecation warning "'count' is passed as positional argument" when converting to Unicode bytes on Python 3.13+

Commits

• ffdf7f5 🔧 fix long description content-type inferred as rst instead of md
• c7197b7 📝 fix changelog entries (#582)
• c390e1f Merge pull request #581 from jawah/refresh-part-2
• f9d6b8c 🔒 add CODEOWNERS
• 7ce1ef1 🔧 use ubuntu-22.04 for cibuildwheel in continuous deployment workflow
• deed205 🔧 update LICENSE copyright
• f11f571 🔧 include noxfile in sdist
• 1ec7c06 🔧 update changelog
• 14b4649 🐛 output(...) replace declarative mark using non iana compliant encoding ...
• 1b06bc0 Merge branch 'refresh-part-2' of github.com:jawah/charset_normalizer into ref...
• Additional commits viewable in compare view

Updates pymdown-extensions from 10.12 to 10.13

Release notes

Sourced from pymdown-extensions's releases.

10.13

• NEW: Snippets: Allow multiple line numbers or line number blocks separated by ,.
• NEW: Snippets: Allow using a negative index for number start indexes and end indexes. Negative indexes are converted to positive indexes based on the number of lines in the snippet.
• FIX: Snippets: Properly capture empty newline at end of file.
• FIX: Snippets: Fix issue where when non sections of files are included, section labels are not stripped.
• FIX: BetterEm: Fixes for complex cases.
• FIX: Blocks: More consistent handling of empty newlines in block processor extensions.

Commits

• 36858c6 Mention negative indexing in Snippets documentation
• 271950f More consistent newline handling in blocks extensions (#2553)
• 9e26f64 Allow negative indexes (#2552)
• 1789d60 Docs: Update JS deps
• 55ccf79 Allow specifying multiple line selection blocks (#2551)
• f6102ac Fix some complex cases in BetterEm (#2547)
• 9df48db Strip sections from included file (#2541)
• 377e8ff Correctly document StripHTML defaults (#2535)
• 68c70f9 Fix broken link to options in block-caption plugin page (#2533)
• See full diff in compare view

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[github-actions]

PR Preview Action v1.4.8
🚀 Deployed preview to https://geneontology.github.io/gocam-py/pr-preview/pr-39/
on branch gh-pages at 2024-12-30 03:13 UTC