Bump the all-dependencies group with 12 updates

Bumps the all-dependencies group with 12 updates:

| Package | From | To |
| --- | --- | --- |
| [pydantic](https://github.com/pydantic/pydantic) | `2.10.4` | `2.10.5` |
| [linkml](https://github.com/linkml/linkml) | `1.8.5` | `1.8.6` |
| [bioregistry](https://github.com/biopragmatics/bioregistry) | `0.11.31` | `0.11.32` |
| [google-api-python-client](https://github.com/googleapis/google-api-python-client) | `2.157.0` | `2.158.0` |
| [protobuf](https://github.com/protocolbuffers/protobuf) | `5.29.2` | `5.29.3` |
| [pygments](https://github.com/pygments/pygments) | `2.19.0` | `2.19.1` |
| [pymdown-extensions](https://github.com/facelessuser/pymdown-extensions) | `10.13` | `10.14` |
| [rdflib](https://github.com/RDFLib/rdflib) | `7.1.1` | `7.1.2` |
| ruamel-yaml | `0.18.9` | `0.18.10` |
| [setuptools](https://github.com/pypa/setuptools) | `75.7.0` | `75.8.0` |
| [sqlalchemy](https://github.com/sqlalchemy/sqlalchemy) | `2.0.36` | `2.0.37` |
| [wrapt](https://github.com/GrahamDumpleton/wrapt) | `1.17.0` | `1.17.1` |


Updates `pydantic` from 2.10.4 to 2.10.5
- [Release notes](https://github.com/pydantic/pydantic/releases)
- [Changelog](https://github.com/pydantic/pydantic/blob/main/HISTORY.md)
- [Commits](pydantic/pydantic@v2.10.4...v2.10.5)

Updates `linkml` from 1.8.5 to 1.8.6
- [Release notes](https://github.com/linkml/linkml/releases)
- [Changelog](https://github.com/linkml/linkml/blob/main/ModelChanges.md)
- [Commits](linkml/linkml@v1.8.5...v1.8.6)

Updates `bioregistry` from 0.11.31 to 0.11.32
- [Release notes](https://github.com/biopragmatics/bioregistry/releases)
- [Commits](biopragmatics/bioregistry@v0.11.31...v0.11.32)

Updates `google-api-python-client` from 2.157.0 to 2.158.0
- [Release notes](https://github.com/googleapis/google-api-python-client/releases)
- [Commits](googleapis/google-api-python-client@v2.157.0...v2.158.0)

Updates `protobuf` from 5.29.2 to 5.29.3
- [Release notes](https://github.com/protocolbuffers/protobuf/releases)
- [Changelog](https://github.com/protocolbuffers/protobuf/blob/main/protobuf_release.bzl)
- [Commits](protocolbuffers/protobuf@v5.29.2...v5.29.3)

Updates `pygments` from 2.19.0 to 2.19.1
- [Release notes](https://github.com/pygments/pygments/releases)
- [Changelog](https://github.com/pygments/pygments/blob/master/CHANGES)
- [Commits](pygments/pygments@2.19.0...2.19.1)

Updates `pymdown-extensions` from 10.13 to 10.14
- [Release notes](https://github.com/facelessuser/pymdown-extensions/releases)
- [Commits](facelessuser/pymdown-extensions@10.13...10.14)

Updates `rdflib` from 7.1.1 to 7.1.2
- [Release notes](https://github.com/RDFLib/rdflib/releases)
- [Changelog](https://github.com/RDFLib/rdflib/blob/main/CHANGELOG.md)
- [Commits](RDFLib/rdflib@7.1.1...7.1.2)

Updates `ruamel-yaml` from 0.18.9 to 0.18.10

Updates `setuptools` from 75.7.0 to 75.8.0
- [Release notes](https://github.com/pypa/setuptools/releases)
- [Changelog](https://github.com/pypa/setuptools/blob/main/NEWS.rst)
- [Commits](pypa/setuptools@v75.7.0...v75.8.0)

Updates `sqlalchemy` from 2.0.36 to 2.0.37
- [Release notes](https://github.com/sqlalchemy/sqlalchemy/releases)
- [Changelog](https://github.com/sqlalchemy/sqlalchemy/blob/main/CHANGES.rst)
- [Commits](https://github.com/sqlalchemy/sqlalchemy/commits)

Updates `wrapt` from 1.17.0 to 1.17.1
- [Release notes](https://github.com/GrahamDumpleton/wrapt/releases)
- [Changelog](https://github.com/GrahamDumpleton/wrapt/blob/develop/docs/changes.rst)
- [Commits](GrahamDumpleton/wrapt@1.17.0...1.17.1)

---
updated-dependencies:
- dependency-name: pydantic
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: all-dependencies
- dependency-name: linkml
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: all-dependencies
- dependency-name: bioregistry
  dependency-type: indirect
  update-type: version-update:semver-patch
  dependency-group: all-dependencies
- dependency-name: google-api-python-client
  dependency-type: indirect
  update-type: version-update:semver-minor
  dependency-group: all-dependencies
- dependency-name: protobuf
  dependency-type: indirect
  update-type: version-update:semver-patch
  dependency-group: all-dependencies
- dependency-name: pygments
  dependency-type: indirect
  update-type: version-update:semver-patch
  dependency-group: all-dependencies
- dependency-name: pymdown-extensions
  dependency-type: indirect
  update-type: version-update:semver-minor
  dependency-group: all-dependencies
- dependency-name: rdflib
  dependency-type: indirect
  update-type: version-update:semver-patch
  dependency-group: all-dependencies
- dependency-name: ruamel-yaml
  dependency-type: indirect
  update-type: version-update:semver-patch
  dependency-group: all-dependencies
- dependency-name: setuptools
  dependency-type: indirect
  update-type: version-update:semver-minor
  dependency-group: all-dependencies
- dependency-name: sqlalchemy
  dependency-type: indirect
  update-type: version-update:semver-patch
  dependency-group: all-dependencies
- dependency-name: wrapt
  dependency-type: indirect
  update-type: version-update:semver-patch
  dependency-group: all-dependencies
...

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