Bug checks

R/search_cols.R

@@ -41,8 +41,7 @@ search_cols <- function(x, col.match) {
       as.vector(colnames(x)),
       pattern = paste0(
         c(
-          "AE", "Assimilation", "efficiency", "AssEm", "ae_",
-        ),
+          "AE", "Assimilation", "efficiency", "AssEm", "ae_"),
         collapse = "|"
       ),
       value = TRUE,

README.md

@@ -1,21 +1,18 @@
 
 <!-- README.md is generated from README.Rmd. Please edit that file -->
 
-# Automated workflow for incorporation and evaluation of data uncertainty in ecological networks with **autoLIMR**
+# Automated workflow for incorporation and evaluation of data uncertainty in ecological networks
 
 <!-- badges: start -->
 
-[![R-CMD-check](https://github.com/gemmagerber/autoLIMR/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/gemmagerber/autoLIMR/actions/workflows/R-CMD-check.yaml)
+[![Published
+in](https://img.shields.io/badge/Ecological_Informatics-green?style=plastic&label=Published%20in&link=https%3A%2F%2Fdoi.org%2F10.1016%2Fj.ecoinf.2023.102375)](https://doi.org/10.1016/j.ecoinf.2023.102375)
 [![Codecov test
 coverage](https://codecov.io/gh/gemmagerber/autoLIMR/branch/main/graph/badge.svg)](https://app.codecov.io/gh/gemmagerber/autoLIMR?branch=main)
 [![test-coverage](https://github.com/gemmagerber/autoLIMR/actions/workflows/test-coverage.yaml/badge.svg)](https://github.com/gemmagerber/autoLIMR/actions/workflows/test-coverage.yaml)
-[![Style](https://github.com/gemmagerber/autoLIMR/actions/workflows/style.yaml/badge.svg)](https://github.com/gemmagerber/autoLIMR/actions/workflows/style.yaml)
 <!-- badges: end -->
 
-<figure>
-<img src="vignettes/images/autoLIMR_logo.png" alt="autoLIMR" />
-<figcaption aria-hidden="true">autoLIMR</figcaption>
-</figure>
+![](vignettes/images/autoLIMR_logo.png)
 
 The goal of **autoLIMR** is to facilitate the inclusion of data
 uncertainty in ecological models. **autoLIMR** does this by: