build: trigger build #35
Workflow file for this run
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| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | ||
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | ||
| name: pkgdown | ||
| on: | ||
| push: | ||
| branches: [main, master, GDR-2371] | ||
| pull_request: | ||
| branches: [main, master] | ||
| release: | ||
| types: [published] | ||
| workflow_call: | ||
| inputs: | ||
| USERNAME: | ||
| required: true | ||
| type: string | ||
| PACKAGE_NAME: | ||
| required: true | ||
| type: string | ||
| BRANCH_NAME: | ||
| required: true | ||
| type: string | ||
| COMMIT_HASH: | ||
| required: true | ||
| type: string | ||
| COMMIT_MSG: | ||
| required: true | ||
| type: string | ||
| secrets: | ||
| PRIVATE_ACCESS_TOKEN: | ||
| required: true | ||
| GDRGENESIS_TRIGGER_TOKEN: | ||
| required: true | ||
| GDRVIZ_TRIGGER_TOKEN: | ||
| required: true | ||
| permissions: | ||
| contents: write | ||
| jobs: | ||
| pkgdown: | ||
| runs-on: ubuntu-latest | ||
| # Only restrict concurrency for non-PR jobs | ||
| concurrency: | ||
| group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }} | ||
| env: | ||
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
| TEST_TAG: user/app:latest-${{ github.sha }} | ||
| USERNAME: ${{ github.actor }} | ||
| PACKAGE_NAME: ${{ github.event.repository.name }} | ||
| BRANCH_NAME: ${{ github.head_ref }} | ||
| BASE_IMAGE: bioconductor/bioconductor_docker:devel | ||
| permissions: | ||
| contents: write | ||
| steps: | ||
| - name: Checkout | ||
| uses: actions/checkout@v2 | ||
| #- name: Set up Docker Buildx | ||
| # uses: docker/setup-buildx-action@v1 | ||
| - name: Build | ||
| uses: docker/build-push-action@v2 | ||
| with: | ||
| context: . | ||
| #load: true | ||
| fetch-depth: 0 | ||
| ref: {{ env.BRANCH_NAME }} | ||
| tags: ${{ env.TEST_TAG }} | ||
| build-args: | | ||
| GITHUB_TOKEN=${{ env.GITHUB_PAT }} | ||
| BASE_IMAGE=${{ env.BASE_IMAGE }} | ||
| - name: Run tests | ||
| run: | | ||
| docker run -v $GITHUB_WORKSPACE:/mnt/vol ${{ env.TEST_TAG }} bash -c "find /mnt/vol/" | ||
| # git fails with exit code 128 | ||
| #docker run -v $GITHUB_WORKSPACE:/mnt/vol ${{ env.TEST_TAG }} Rscript -e 'pkgdown::deploy_to_branch("/mnt/vol/", new_process = FALSE)' | ||
| docker run -v `pwd`:/mnt/vol ${{ env.TEST_TAG }} Rscript -e 'pkgdown::build_site_github_pages("/mnt/vol", new_process = FALSE, install = FALSE)' | ||
| - name: Deploy to GitHub pages 🚀 | ||
| if: github.event_name != 'pull_request' | ||
| uses: JamesIves/[email protected] | ||
| with: | ||
| clean: true | ||
| branch: pages | ||
| folder: docs | ||
| target-folder: docs | ||
