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Bump actions/setup-python from 4 to 5 #87

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Bump actions/setup-python from 4 to 5

Bump actions/setup-python from 4 to 5 #87

Workflow file for this run

.github/workflows/run_tests.yml at b63ea0a
name: Tests
on:
push:
branches:
- main
pull_request:
jobs:
run-tests:
runs-on: ubuntu-latest
strategy:
matrix:
python-version: [3.7, 3.8, 3.9, "3.10"]
max-parallel: 5
steps:
- uses: actions/checkout@v4
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- uses: actions/cache@v3
with:
path: ~/.cache/pip
key: ${{ runner.os }}-pip-${{ hashFiles('**/setup.py') }}
restore-keys: |
${{ runner.os }}-pip-
- uses: actions/cache@v3
with:
path: ~/voxelwise_tutorials_data/shortclips
key: shortclips-dataset
- name: Install dependencies
run: |
pip install -U setuptools
pip install -U wheel
# install himalaya from source to get early testing
pip install git+https://github.com/gallantlab/himalaya.git
pip install -e ."[github]"
# use neurodebian installer for travis
bash <(wget -q -O- http://neuro.debian.net/_files/neurodebian-travis.sh)
sudo apt-get update -qq
sudo apt-get install git-annex-standalone
- name: Lint with flake8
run: |
pip install -q flake8
# stop the build if there are Python syntax errors or undefined names
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
flake8 . --count --exit-zero --ignore=E402,C901 --max-line-length=127 --statistics
- name: Config git-annex
run: |
# add some git config for git-annex
git config --global user.email "[email protected]"
git config --global user.name "Github Actions"
- name: Test with pytest
run: |
# run the tests
pip install -q pytest pytest-cov codecov
pytest --cov=./
- name: Run codecov
run: |
codecov
- name: Run some tutorials
run: |
# run tutorials with a shortcut option to skip model fitting
HIMALAYA_SKIP_FIT=True python tutorials/shortclips/00_download_shortclips.py
HIMALAYA_SKIP_FIT=True python tutorials/shortclips/01_plot_explainable_variance.py
HIMALAYA_SKIP_FIT=True python tutorials/shortclips/02_plot_ridge_regression.py
HIMALAYA_SKIP_FIT=True python tutorials/shortclips/03_plot_wordnet_model.py
HIMALAYA_SKIP_FIT=True python tutorials/shortclips/04_plot_hemodynamic_response.py
HIMALAYA_SKIP_FIT=True python tutorials/shortclips/05_plot_motion_energy_model.py
HIMALAYA_SKIP_FIT=True python tutorials/shortclips/06_plot_banded_ridge_model.py