further streamline

Dockerfile

@@ -52,7 +52,6 @@ RUN curl -fsSL https://install.julialang.org | sh -s -- --yes
 
 RUN ${USER_HOME_DIR}/.juliaup/bin/julia --project=${mainpath} -e "import Pkg; Pkg.instantiate();"
 RUN ${USER_HOME_DIR}/.juliaup/bin/julia --project=${mainpath} ${mainpath}/src/warmup.jl
-RUN ${USER_HOME_DIR}/.juliaup/bin/julia --project=${mainpath} ${mainpath}/src/download_stuff.jl
 
 ENV MPI_INC_DIR /usr/lib/x86_64-linux-gnu/openmpi/include
 

src/warmup.jl

@@ -1,8 +1,10 @@
-using ClimateModels, MITgcm, OceanStateEstimation
 using Pluto, PlutoUI, PlutoSliderServer, Downloads, IJulia
 #import Plots
 import CairoMakie
 
+using ClimateModels, MITgcm, OceanStateEstimation, MeshArrays
+##
+
 p0=pathof(MITgcm)
 fil=joinpath(dirname(p0),"..","examples","configurations","OCCA2.toml")
 MC=MITgcm_config(inputs=read_toml(fil))
@@ -12,11 +14,32 @@ build(MC)
 mv(joinpath(MC,"MITgcm/mysetups/ECCOv4/build/mitgcmuv"),"mitgcmuv")
 rm(pathof(MC),recursive=true)
 
+##
+
 tmp=ModelConfig(model=ClimateModels.RandomWalker)
 setup(tmp)
 launch(tmp) 
 
-notebook_url="https://raw.githubusercontent.com/gaelforget/OceanStateEstimation.jl/master/examples/ECCO/ECCO_standard_plots.jl"
-path_to_notebook = Downloads.download(notebook_url)
-#include(path_to_notebook)
+##
+
+using ClimateModels.Git
+run(`$(git()) clone https://github.com/gaelforget/OceanStateEstimation.jl`)
+
+MeshArrays.GRID_LLC90_download()
+OceanStateEstimation.ECCOdiags_add("release2")
+OceanStateEstimation.ECCOdiags_add("release4")
+
+Downloads.download(
+  "https://zenodo.org/record/5784905/files/interp_coeffs_halfdeg.jld2",
+  joinpath(OceanStateEstimation.ScratchSpaces.ECCO,"interp_coeffs_halfdeg.jld2");
+  timeout=60000.0)
+
+##
+
+using Pkg
+nb="OceanStateEstimation.jl/examples/ECCO/ECCO_standard_plots.jl"
+Pluto.activate_notebook_environment(nb)
+Pkg.instantiate()
+include(nb)
+Pkg.activate()