Merge pull request #12 from gaelforget/v0p2p1a

update README, compile ECCO

.github/workflows/binder.yaml

@@ -3,7 +3,7 @@ on:
   push:
     branches:
       - main
-      - 20240330_updates
+      - v0p2p1a
 jobs:
   binder:
     runs-on: ubuntu-latest

Dockerfile

@@ -56,6 +56,8 @@ RUN ${USER_HOME_DIR}/.juliaup/bin/julia --project=${mainpath} ${mainpath}/src/do
 
 ENV MPI_INC_DIR /usr/lib/x86_64-linux-gnu/openmpi/include
 
+RUN source ${mainpath}/src/build_MITgcm_ECCO.sh
+
 RUN jupyter lab build && \
     jupyter lab clean && \
     pip install ${mainpath} --no-cache-dir && \

README.md

@@ -1,15 +1,14 @@
-
 [![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/gaelforget/ECCO-Docker/HEAD)
 [![DOI](https://zenodo.org/badge/507698620.svg)](https://zenodo.org/badge/latestdoi/507698620)
 
 This [Docker image configuration](https://www.docker.com) makes it easy to analyze and run [ECCO](https://ecco-group.org) estimates and other [MITgcm](http://mitgcm.org) model solutions. 
 
 It includes :
 
-- [MITgcm](https://mitgcm.readthedocs.io/en/latest/?badge=latest) (67z) compiled for [ECCOv4](https://eccov4.readthedocs.io/en/latest/) (r2)
+- [MITgcm](https://mitgcm.readthedocs.io/en/latest/?badge=latest) (version 68o) compiled for [ECCO4](https://eccov4.readthedocs.io/en/latest/)
 - gfortran, MPI, and NetCDF libraries for MITgcm
 - Julia, R, Python, and Octave kernels for Jupyter
-- Pluto notebook support (+ Jupyter + terminal)
+- Notebook support (Jupyter and Pluto)
 
 ## Directions
 
@@ -41,6 +40,6 @@ docker run -p 8888:8888 ecco-docker-1
 
 In all cases (method 1, 2a, or 2b), the result should look like this in your web browser window :
 
-![Screen Shot 2022-06-26 at 10 43 40 PM](https://user-images.githubusercontent.com/20276764/175850300-04fd85a4-45ac-4d88-8b32-91f585baa8cb.png)
+![Screen Shot 2022-06-26 at 10 43 40 PM](https://private-user-images.githubusercontent.com/20276764/318265855-b51bb390-c127-4a1a-93e9-6fcf75331e60.png?jwt=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.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.1NZm6frwr81hBrbUGGbNXHYQEyojCNTg2Zul9b3YvZc)
 
 _Note: this repository derives from the [JuliaClimate/Notebooks](https://github.com/JuliaClimate/Notebooks) Docker configuration._

binder/Dockerfile

@@ -1,2 +1,2 @@
 ### DO NOT EDIT THIS FILE! This Is Automatically Generated And Will Be Overwritten ###
-FROM gaelforget/ecco-docker:54d366cd1f0b
+FROM gaelforget/ecco-docker:0c90d06cc0dc

src/Project.toml

@@ -1,4 +1,5 @@
 [deps]
+ArgoData = "9eb831cf-c491-48dc-bed4-6aca718df73c"
 CairoMakie = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0"
 ClimateModels = "f6adb021-9183-4f40-84dc-8cea6f651bb0"
 DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
@@ -12,7 +13,9 @@ JLD2 = "033835bb-8acc-5ee8-8aae-3f567f8a3819"
 MITgcm = "dce5fa8e-68ce-4431-a242-9469c69627a0"
 MeshArrays = "cb8c808f-1acf-59a3-9d2b-6e38d009f683"
 NCTiles = "4c1fdd90-559f-11e9-1abf-07ceafc4ffc0"
+OceanRobots = "0b51df41-3294-4961-8d23-db645e32016d"
 OceanStateEstimation = "891f6deb-a4f5-4bc5-a2e3-1e8f649cdd2c"
+PlanktonIndividuals = "dfeb4ede-c75e-11e9-050d-41ab7a730e9e"
 Pluto = "c3e4b0f8-55cb-11ea-2926-15256bba5781"
 PlutoSliderServer = "2fc8631c-6f24-4c5b-bca7-cbb509c42db4"
 PlutoUI = "7f904dfe-b85e-4ff6-b463-dae2292396a8"