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lessons/lesson04_ggplot.html

@@ -994,7 +994,7 @@ <h1>Organizing ggplot Code</h1>
 <section id="further-reading-and-online-examples" class="level1">
 <h1>Further Reading and Online Examples:</h1>
 <ul>
-<li><a href="https://www.rstudio.com/wp-content/uploads/2015/03/ggplot2-cheatsheet.pdf" class="uri">https://www.rstudio.com/wp-content/uploads/2015/03/ggplot2-cheatsheet.pdf</a></li>
+<li><a href="https://www.maths.usyd.edu.au/u/UG/SM/STAT3022/r/current/Misc/data-visualization-2.1.pdf" class="uri">https://www.maths.usyd.edu.au/u/UG/SM/STAT3022/r/current/Misc/data-visualization-2.1.pdf</a></li>
 <li><a href="http://r-statistics.co/Top50-Ggplot2-Visualizations-MasterList-R-Code.html" class="uri">http://r-statistics.co/Top50-Ggplot2-Visualizations-MasterList-R-Code.html</a></li>
 <li>The #TidyTuesday hashtag on Twitter: <a href="https://twitter.com/hashtag/tidytuesday?lang=en" class="uri">https://twitter.com/hashtag/tidytuesday?lang=en</a></li>
 </ul>

lessons/lesson06_atomic_vectors.html

@@ -1115,19 +1115,9 @@ <h2 class="anchored" data-anchor-id="missing-data-in-atomic-vectors">Missing Dat
 <pre><code>[1] TRUE</code></pre>
 </div>
 </div>
-<section id="review-atomic-vector-types" class="level3">
-<h3 class="anchored" data-anchor-id="review-atomic-vector-types">Review: Atomic Vector Types</h3>
-<p>Because there are multiple types of atomic data, there are <em>technically</em> multiple types of <code>NA</code>. Recall the four atomic data types of use in the health sciences:</p>
-<ol type="1">
-<li><code>logical</code>: This is the most basic type of information that can be stored in <code>R</code>. A vector with elements of class <code>logical</code> is a vector of only <code>TRUE</code> or <code>FALSE</code> values.</li>
-<li><code>integer</code>: This is the second-most basic type of information. An <code>integer</code> vector is a vector of positive or negative counting numbers (and 0).</li>
-<li><code>numeric</code>: This is the class for the Real numbers in <code>R</code>. Any <code>integer</code> is necessarily also <code>numeric</code>, but the reverse is not true.</li>
-<li><code>character</code>: This is the most complex class of atomic information. This class ensures that the information you type into <code>R</code> stays marked with the keystrokes you typed to enter it. Therefore, <code>"10"</code> is not recorded as the integer 10, or the real number 10.000000…, but rather the combined keystrokes of the “1” and “0” keys on your keyboard (to be very technical, “1” and “0” are stored with the ASCII code 049 and 048, respectively, or perhaps as a UTF-8 encoded value).</li>
-</ol>
-</section>
 <section id="type-specific-missing-values" class="level3">
 <h3 class="anchored" data-anchor-id="type-specific-missing-values">Type-Specific Missing Values</h3>
-<p>Because we have four major atomic types, we have four ways that data from atomic vectors could be missing. They all start with <code>NA</code>.</p>
+<p>Because there are multiple types of atomic data, there are <em>technically</em> multiple types of <code>NA</code>. They all start with <code>NA</code>.</p>
 <ol type="1">
 <li><code>NA</code>: This is the missing value marker for a <strong>logical</strong> vector.</li>
 <li><code>NA_integer_</code>: This is the missing value marker for an <strong>integer</strong> vector.</li>

lessons/lesson09_dplyr.html

@@ -1188,20 +1188,20 @@ <h1>Grouping and Group Summaries with <code>group_by()</code> and <code>summaris
 <span id="cb63-4"><a href="#cb63-4" aria-hidden="true" tabindex="-1"></a>  <span class="fu">mutate</span>(<span class="at">resid_delay =</span> delay <span class="sc">-</span> <span class="fu">mean</span>(delay)) <span class="sc">%&gt;%</span> </span>
 <span id="cb63-5"><a href="#cb63-5" aria-hidden="true" tabindex="-1"></a>  <span class="fu">arrange</span>(resid_delay)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
 <div class="cell-output cell-output-stdout">
-<pre><code># A tibble: 105 × 3
+<pre><code># A tibble: 104 × 3
    dest     delay resid_delay
    &lt;chr&gt;    &lt;dbl&gt;       &lt;dbl&gt;
- 1 LEX   -22           -30.8 
- 2 PSP   -12.7         -21.6 
- 3 SNA    -7.87        -16.7 
- 4 STT    -3.84        -12.7 
- 5 ANC    -2.5         -11.3 
- 6 HNL    -1.37        -10.2 
- 7 SEA    -1.10         -9.95
- 8 MVY    -0.286        -9.14
- 9 LGB    -0.0620       -8.91
-10 SLC     0.176        -8.67
-# ℹ 95 more rows</code></pre>
+ 1 LEX   -22           -30.7 
+ 2 PSP   -12.7         -21.5 
+ 3 SNA    -7.87        -16.6 
+ 4 STT    -3.84        -12.6 
+ 5 ANC    -2.5         -11.2 
+ 6 HNL    -1.37        -10.1 
+ 7 SEA    -1.10         -9.83
+ 8 MVY    -0.286        -9.02
+ 9 LGB    -0.0620       -8.79
+10 SLC     0.176        -8.56
+# ℹ 94 more rows</code></pre>
 </div>
 </div>
 <p>We can always ungroup our data table with the <code>ungroup()</code> function.</p>
@@ -1359,7 +1359,7 @@ <h3 class="anchored" data-anchor-id="examples-2">Examples</h3>
 <span id="cb77-3"><a href="#cb77-3" aria-hidden="true" tabindex="-1"></a>  <span class="fu">summarise</span>(<span class="at">distance_sd =</span> <span class="fu">sd</span>(distance)) <span class="sc">%&gt;%</span> </span>
 <span id="cb77-4"><a href="#cb77-4" aria-hidden="true" tabindex="-1"></a>  <span class="fu">arrange</span>(<span class="fu">desc</span>(distance_sd))</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
 <div class="cell-output cell-output-stdout">
-<pre><code># A tibble: 105 × 2
+<pre><code># A tibble: 104 × 2
    dest  distance_sd
    &lt;chr&gt;       &lt;dbl&gt;
  1 EGE         10.5 
@@ -1372,7 +1372,7 @@ <h3 class="anchored" data-anchor-id="examples-2">Examples</h3>
  8 PHX          9.86
  9 LAX          9.66
 10 IND          9.46
-# ℹ 95 more rows</code></pre>
+# ℹ 94 more rows</code></pre>
 </div>
 <div class="sourceCode cell-code" id="cb79"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb79-1"><a href="#cb79-1" aria-hidden="true" tabindex="-1"></a>not_cancelled <span class="sc">%&gt;%</span> </span>
 <span id="cb79-2"><a href="#cb79-2" aria-hidden="true" tabindex="-1"></a>  <span class="fu">group_by</span>(year, month, day) <span class="sc">%&gt;%</span> </span>
@@ -1412,7 +1412,7 @@ <h3 class="anchored" data-anchor-id="examples-2">Examples</h3>
 <span id="cb82-3"><a href="#cb82-3" aria-hidden="true" tabindex="-1"></a>  <span class="fu">group_by</span>(dest) <span class="sc">%&gt;%</span></span>
 <span id="cb82-4"><a href="#cb82-4" aria-hidden="true" tabindex="-1"></a>  <span class="fu">summarise</span>(<span class="at">n =</span> <span class="fu">n</span>())</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
 <div class="cell-output cell-output-stdout">
-<pre><code># A tibble: 105 × 2
+<pre><code># A tibble: 104 × 2
    dest      n
    &lt;chr&gt; &lt;int&gt;
  1 ABQ     254
@@ -1425,13 +1425,13 @@ <h3 class="anchored" data-anchor-id="examples-2">Examples</h3>
  8 BDL     412
  9 BGR     358
 10 BHM     269
-# ℹ 95 more rows</code></pre>
+# ℹ 94 more rows</code></pre>
 </div>
 <div class="sourceCode cell-code" id="cb84"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb84-1"><a href="#cb84-1" aria-hidden="true" tabindex="-1"></a><span class="co"># use</span></span>
 <span id="cb84-2"><a href="#cb84-2" aria-hidden="true" tabindex="-1"></a>not_cancelled <span class="sc">%&gt;%</span> </span>
 <span id="cb84-3"><a href="#cb84-3" aria-hidden="true" tabindex="-1"></a>  <span class="fu">count</span>(dest)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
 <div class="cell-output cell-output-stdout">
-<pre><code># A tibble: 105 × 2
+<pre><code># A tibble: 104 × 2
    dest      n
    &lt;chr&gt; &lt;int&gt;
  1 ABQ     254
@@ -1444,7 +1444,7 @@ <h3 class="anchored" data-anchor-id="examples-2">Examples</h3>
  8 BDL     412
  9 BGR     358
 10 BHM     269
-# ℹ 95 more rows</code></pre>
+# ℹ 94 more rows</code></pre>
 </div>
 </div>
 <ol start="4" type="1">

lessons/lesson10_stringr.html

@@ -380,7 +380,7 @@ <h2 class="anchored" data-anchor-id="example-data">Example Data</h2>
 <ol type="1">
 <li>Inspect the vector <code>fruit</code>.</li>
 <li>Inspect first 20 elements of the vector <code>sentences</code>.</li>
-<li>Create a smaller version of the <code>outcomesCTN0094</code> tibble with the following columns: <code>who</code>, <code>usePatternUDS</code>, and <code>ctn0094_relapse_time</code>. Save it as an object in your Global environment called <code>outcome_df</code>.</li>
+<li>Create a smaller version of the <code>outcomesCTN0094</code> tibble with the following columns: <code>who</code>, <code>usePatternUDS</code>, and <code>RsT_ctnNinetyFour_2023</code>. Save it as an object in your Global environment called <code>outcome_df</code>.</li>
 </ol>
 </div>
 </div>