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Release 1.1.0
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@tfenne tfenne released this 07 Nov 23:44
1.1.0
92a8ad4

Release 1.1.0 is a minor feature release with the following updates:

  • Add support for single-end reads in the consensus building tool chain (i.e. GroupReadsByUmi and CallMolecularConsensusReads)
  • Do not try to automatically index BAM files with HTSJDK when a long reference sequence is present in the sequence dictionary
    * Fix has collision problem that could cause sorting in RandomQuery order to do the wrong thing
  • Change to avoid using the Intel inflater/delfater on Mac OS X due to a bug in the Mac implementation
  • Scala API for reading and writing Picard's IntervalList files
  • Fix bug in the calculation of the consensus UMI bases during duplex consensus calling
  • Various updates to SamBuilder
  • Minor updates to VCF API
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