Name		Name	Last commit message	Last commit date
Latest commit History 2 Commits
DataBaseMerge.ipynb		DataBaseMerge.ipynb
DisplayKDEandPCJulie.ipynb		DisplayKDEandPCJulie.ipynb
Download good pkl files.ipynb		Download good pkl files.ipynb
EPHYS1-Generate_Dataframes.ipynb		EPHYS1-Generate_Dataframes.ipynb
EPHYS2-Population_Coding.ipynb		EPHYS2-Population_Coding.ipynb
EPHYS3-Neural_Clustering.ipynb		EPHYS3-Neural_Clustering.ipynb
EPHYS4-Population_Clustering.ipynb		EPHYS4-Population_Clustering.ipynb
Generate vocParamTable.ipynb		Generate vocParamTable.ipynb
GenerateDataBase.ipynb		GenerateDataBase.ipynb
GenerateDataBase2.ipynb		GenerateDataBase2.ipynb
GenerateDataBasePosPC.ipynb		GenerateDataBasePosPC.ipynb
GenerateMLFilters.ipynb		GenerateMLFilters.ipynb
GenerateMLFiltersJulie.ipynb		GenerateMLFiltersJulie.ipynb
GenerateMLFiltersJuliePerZone.ipynb		GenerateMLFiltersJuliePerZone.ipynb
GenerateMLFiltersPerZone.ipynb		GenerateMLFiltersPerZone.ipynb
GenerateReport.ipynb		GenerateReport.ipynb
GenerateReport2.ipynb		GenerateReport2.ipynb
Methods_walkthrough.ipynb		Methods_walkthrough.ipynb
PlotPSTHCategoriesGUI.ipynb		PlotPSTHCategoriesGUI.ipynb
PlotSpikeSortedCategoriesGUI.ipynb		PlotSpikeSortedCategoriesGUI.ipynb
README.md		README.md
SpikeSortingStatistics.ipynb		SpikeSortingStatistics.ipynb
SpikeSortingStatisticsPart2.ipynb		SpikeSortingStatisticsPart2.ipynb
SummaryStatistics.ipynb		SummaryStatistics.ipynb
Supplementary Calculations.ipynb		Supplementary Calculations.ipynb
config.py		config.py
decoders.py		decoders.py
decodingCallTypesNaiveBayes.ipynb		decodingCallTypesNaiveBayes.ipynb
decodingCallTypesNaiveBayesJulie.ipynb		decodingCallTypesNaiveBayesJulie.ipynb
decodingCallTypesNaiveBayesPart2-PerRegion.ipynb		decodingCallTypesNaiveBayesPart2-PerRegion.ipynb
decodingCallTypesNaiveBayesPart2-SameBird.ipynb		decodingCallTypesNaiveBayesPart2-SameBird.ipynb
decodingCallTypesNaiveBayesPart2.ipynb		decodingCallTypesNaiveBayesPart2.ipynb
decodingCallTypesNaiveBayesPart2AcousticClusters.ipynb		decodingCallTypesNaiveBayesPart2AcousticClusters.ipynb
decodingCallTypesNaiveBayesPart2Julie.ipynb		decodingCallTypesNaiveBayesPart2Julie.ipynb
decodingCallTypesNaiveBayesPart3Julie-PerRegion.ipynb		decodingCallTypesNaiveBayesPart3Julie-PerRegion.ipynb
decodingCallTypesNaiveBayesPart3Julie-SameBird.ipynb		decodingCallTypesNaiveBayesPart3Julie-SameBird.ipynb
decodingCallTypesNaiveBayesPart3Julie.ipynb		decodingCallTypesNaiveBayesPart3Julie.ipynb
gapEstimation.ipynb		gapEstimation.ipynb
kilosortCompare.ipynb		kilosortCompare.ipynb
plotConfusions.ipynb		plotConfusions.ipynb
plotConfusionsArea.ipynb		plotConfusionsArea.ipynb
plotConfusionsBird.ipynb		plotConfusionsBird.ipynb
plotConfusionsHerminaNW.ipynb		plotConfusionsHerminaNW.ipynb
plotConfusionsJulie.ipynb		plotConfusionsJulie.ipynb
plotConfusionsJulieArea.ipynb		plotConfusionsJulieArea.ipynb
plotConfusionsJulieBird.ipynb		plotConfusionsJulieBird.ipynb
plotElectrodes3D.ipynb		plotElectrodes3D.ipynb
readRHDHeader.ipynb		readRHDHeader.ipynb

Repository files navigation

Ensemble-Code-Cell-Reports-2022

This repository has all the jupyter notebooks and python code that were used in the decoding, encoding and hierarchical analyses of the ensemble neural responses of high-level avian auditory neurons for call types. The research was published in:

Sparse Ensemble Neural Code for a Complete Vocal Repertoire by Robotka et al. Cell Reports 2022.

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

Repository files navigation

Ensemble-Code-Cell-Reports-2022

About

Releases 1

Packages

Languages

ftheunissen/Ensemble-Code-Cell-Reports-2022

Folders and files

Latest commit

History

Repository files navigation

Ensemble-Code-Cell-Reports-2022

About

Resources

Stars

Watchers

Forks

Releases 1

Packages 0

Languages

Packages