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updated authors, minor punctuation changes #8

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2b3e07c
updated authors, minor punctuation changes
heuermh Jan 12, 2016
539bcba
fix merge conflicts
heuermh Sep 7, 2016
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32 changes: 17 additions & 15 deletions adam/nih-bd2k-112015-poster/nih-bd2k-112015-poster.tex
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Expand Up @@ -28,26 +28,29 @@
\hspace{92pt}
\fontsize{1cm}{1em}
Frank~Austin~Nothaft$^{1,2,\star}$, Arun~Ahuja$^3$, Timothy~Danford$^{1,4}$,
Jey~Kottalam$^1$, Matt~Massie$^1$, Audrey~Musselman-Brown$^5$, Beau~Norgeot$^5$,
Ravi~Pandya$^6$, Hannes~Schmidt$^5$, Eric~Tu$^1$,
Michael~Heuer$^1$, Jey~Kottalam$^1$, Matt~Massie$^1$, Audrey~Musselman-Brown$^5$,
Beau~Norgeot$^{5,6}$, Ravi~Pandya$^7$, Justin~Paschall$^1$, Hannes~Schmidt$^5$,

\hspace{100pt} Ryan~Williams$^3$,
\hspace{100pt} Eric~Tu$^1$, Ryan~Williams$^3$,
Carl~Yeksigian$^4$, Michael~Linderman$^3$, Jeff~Hammerbacher$^3$,
\textbf{Benedict~Paten}$^{5,\star}$, Uri~Laserson$^7$, David~Haussler$^5$,
Anthony~D.~Joseph$^1$, David~A.~Patterson$^{1,2}$
\textbf{Benedict~Paten}$^{5,\star}$, Uri~Laserson$^{3,9}$, Gaddy Getz$^{10}$,
David~Haussler$^5$, Anthony~D.~Joseph$^1$, David~A.~Patterson$^{1,2}$

\hspace{100pt}
$^1$AMPLab, University of California, Berkeley, CA,
$^2$ASPIRE Lab, University of California, Berkeley, CA,
$^3$Icahn School of Medicine at Mount Sinai, New York, NY,

\hspace{100pt}
$^4$GenomeBridge, Cambridge, MA,
$^4$Tamr, Inc., Cambridge, MA,
$^5$Genome Informatics Lab, University of Californa, Santa Cruz, CA,
$^6$Pharmaceutical Science and Pharmacogenomics, University of California, San Francisco, CA

\hspace{100pt}
$^6$Microsoft Research, Redmond, WA,
$^7$Cloudera, Inc., San Francisco, CA
$^7$Microsoft Research, Redmond, WA,
$^8$GenomeBridge, Cambridge, MA,
$^9$Cloudera, Inc., San Francisco, CA,
$^{10}$The Broad Institute of MIT and Harvard, Cambridge, MA

\hspace{100pt}
\fontsize{1cm}{1em}
Expand Down Expand Up @@ -206,15 +209,14 @@
\item We evaluated ADAM by replacing the GATK ``Best Practices'' pre-processing
stages with an ADAM based reimplementation
\item GATK was run on a single \texttt{i2.8xlarge} node, ADAM was run on 16
\texttt{r3.4xlarge} nodes.
\item The ADAM-based pipeline is $3.55\times$ faster, and $2\times$ cheaper.
\item The two pipelines generate statistically equivalent variant calls:
\begin{itemize}
\item During this process, we identified two bugs in the GATK/Picard.
\texttt{r3.4xlarge} nodes
\item The ADAM-based pipeline is $3.55\times$ faster, and $2\times$ cheaper
\item The two pipelines generate statistically equivalent variant calls
\end{itemize}

During this process, we identified two bugs in the GATK/Picard.
Both of these issues are caused by sort order invariants necessitated by
programming at a lower level of abstraction.
\end{itemize}
\end{itemize}
\end{minipage}
\begin{minipage}{0.03\linewidth}
\hfill
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