Merge pull request #70 from fmi-faim/pre-commit-ci-update-config

[pre-commit.ci] pre-commit autoupdate
fmi-faim · Oct 9, 2024 · 7ff3b33 · 7ff3b33
2 parents e0ae7ca + b64fc36
commit 7ff3b33
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Showing 6 changed files with 10 additions and 5 deletions.
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -7,12 +7,12 @@ ci:
 repos:
   - repo: https://github.com/astral-sh/ruff-pre-commit
     # Ruff version.
-    rev: 'v0.3.5'
+    rev: 'v0.6.3'
     hooks:
       - id: ruff
         args: [--fix, --exit-non-zero-on-fix]
       - id: ruff-format
   - repo: https://github.com/fsfe/reuse-tool
-    rev: v3.0.1
+    rev: v4.0.3
     hooks:
       - id: reuse
diff --git a/scripts/searchfirst.py b/scripts/searchfirst.py
@@ -5,6 +5,7 @@
 """SearchFirst script to run a simple segmentation."""
 
 import typer
+
 from faim_wako_searchfirst.main import run
 
 

diff --git a/tests/test_cellpose.py b/tests/test_cellpose.py
@@ -9,6 +9,7 @@
 from pathlib import Path
 
 import pytest
+
 from faim_wako_searchfirst.main import run
 
 

diff --git a/tests/test_filter.py b/tests/test_filter.py
@@ -8,9 +8,10 @@
 
 import numpy as np
 import pytest
-from faim_wako_searchfirst.filter import border, dilate, feature
 from skimage.io import imread
 
+from faim_wako_searchfirst.filter import border, dilate, feature
+
 
 @pytest.fixture
 def _label_image():

diff --git a/tests/test_main.py b/tests/test_main.py
@@ -11,11 +11,12 @@
 import numpy as np
 import pandas as pd
 import pytest
+from skimage.io import imread
+
 from faim_wako_searchfirst.filter import area, bounding_box, solidity
 from faim_wako_searchfirst.main import run
 from faim_wako_searchfirst.sample import centers, dense_grid, grid_overlap
 from faim_wako_searchfirst.segment import threshold
-from skimage.io import imread
 
 
 @pytest.fixture

diff --git a/tests/test_sample.py b/tests/test_sample.py
@@ -8,9 +8,10 @@
 
 import pandas as pd
 import pytest
-from faim_wako_searchfirst.sample import object_centered_grid, region_centered_grid
 from skimage.io import imread
 
+from faim_wako_searchfirst.sample import object_centered_grid, region_centered_grid
+
 
 @pytest.fixture
 def _label_image():
Original file line number	Diff line number	Diff line change
Expand Up		@@ -5,6 +5,7 @@
		"""SearchFirst script to run a simple segmentation."""

		import typer

		from faim_wako_searchfirst.main import run


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Original file line number	Diff line number	Diff line change
Expand Up		@@ -9,6 +9,7 @@
		from pathlib import Path

		import pytest

		from faim_wako_searchfirst.main import run


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