Add apoc pixel classifier segmentation #147
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| # SPDX-FileCopyrightText: 2023 Friedrich Miescher Institute for Biomedical Research (FMI), Basel (Switzerland) | |
| # | |
| # SPDX-License-Identifier: MIT | |
| name: test | |
| on: | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| branches: [main, master] | |
| concurrency: | |
| group: test-${{ github.head_ref }} | |
| cancel-in-progress: true | |
| env: | |
| PYTHONUNBUFFERED: "1" | |
| FORCE_COLOR: "1" | |
| jobs: | |
| run: | |
| name: Python ${{ matrix.python-version }} on ${{ startsWith(matrix.os, 'macos-') && 'macOS' || startsWith(matrix.os, 'windows-') && 'Windows' || 'Linux' }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, windows-latest, macos-latest] | |
| python-version: ['3.8', '3.9', '3.10', '3.11'] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| # # these libraries, along with pytest-xvfb (added in the `deps` in tox.ini), | |
| # # enable testing on Qt on linux | |
| # - name: Install Linux libraries | |
| # if: runner.os == 'Linux' | |
| # run: | | |
| # sudo apt-get install -y libdbus-1-3 libxkbcommon-x11-0 libxcb-icccm4 \ | |
| # libxcb-image0 libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 \ | |
| # libxcb-xinerama0 libxcb-xinput0 libxcb-xfixes0 | |
| # # strategy borrowed from vispy for installing opengl libs on windows | |
| # - name: Install Windows OpenGL | |
| # if: runner.os == 'Windows' | |
| # run: | | |
| # git clone --depth 1 https://github.com/pyvista/gl-ci-helpers.git | |
| # powershell gl-ci-helpers/appveyor/install_opengl.ps1 | |
| - name: Install Hatch | |
| run: pip install --upgrade hatch | |
| - name: Run tests | |
| run: hatch run cov --cov-report xml | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} |