V0.10.0 #197
Merged
V0.10.0 #197
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Previously, there were two interfaces in the `OptimizationProblem` for calling evaluation functions (e.g. objectives): one for evaluating individuals, and one for populations. To simplify the code base, these two methods were now unified. To ensure backward compatibility, a 1D-Array is returned if a single individual is passed to the function.
Co-authored-by: r.jaepel <[email protected]>
Previously, the cadet path set in Cadet(install_path="path") was not inherited into cadet instances created from the run() method.
Fix and extend tests about .calculate_interstitial_rt/velocity
Previously, this was required because CADET-Core was not setting the PATH correctly. Now, this can lead to inconsistent behaviour. Note, this requires CADET>4.4.0
Recently, the option to (not) plot the time axis using minutes was introduced. This commit fixes some methods that were not properly implemented. Moreover, the name of the flag was changed from `use_minutes` to `x_axis_in_minutes` to make clear that only plotting is affected and not other parameter values (e.g. start and end times).
Co-authored-by: daklauss <[email protected]>
Updates and Fixes plot_at_position by adding start, end and x_axis_in_minutes as parameters in solution.py
CADET-Core now returns a 1D Vector (instead of a 2D where the second dimension happens to only have one entry).
Adds n_par = 1 and ncol = 1 as test cases in test_cadet_adapter.
Replace link to default conda with link to mini-forge
Not sure if this is considered good practice. However, until we have a better way to include examples / tests in the documentation, I believe this does not do too much harm.
|
I still have an issue with building the documentation. I get an error for
|
|
Final lines: cadet env: However, I got about 2000 lines of errors: https://gist.github.com/ronald-jaepel/ac1da0f9919474967af0ef7213a706f7 |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
v0.10.0fromdevCADETProcess/__init__.py.zenodo.jsonand update authorsdocs/source/release_notes/vX.Y.Z.mdindex.mddev(in case changes were made)vX.Y.Zgit tag 'vX.Y.Z') and push tag: (git push origin --tag)Other To-Dos: