Make prism kernels return `np.nan` on vertices #389

Workflow file for this run

	# Configuration for running tests with GitHub Actions
	#
	# NOTE: Pin actions to a specific commit to avoid having the authentication
	# token stolen if the Action is compromised. See the comments and links here:
	# https://github.com/pypa/gh-action-pypi-publish/issues/27
	#
	name: test

	# Only build PRs, the main branch, and releases. Pushes to branches will only
	# be built when a PR is opened. This avoids duplicated buids in PRs comming
	# from branches in the origin repository (1 for PR and 1 for push).
	on:
	pull_request:
	push:
	branches:
	- main
	release:
	types:
	- published

	# Use bash by default in all jobs
	defaults:
	run:
	# Using "-l {0}" is necessary for conda environments to be activated
	# But this breaks on MacOS if using actions/setup-python:
	# https://github.com/actions/setup-python/issues/132
	shell: bash

	jobs:
	#############################################################################
	# Run tests
	test:
	name: ${{ matrix.os }} python=${{ matrix.python }} dependencies=${{ matrix.dependencies }}
	runs-on: ${{ matrix.os }}
	strategy:
	# Otherwise, the workflow would stop if a single job fails. We want to
	# run all of them to catch failures in different combinations.
	fail-fast: false
	matrix:
	os: [ubuntu-latest, macos-latest, windows-latest]
	python: ["3.8", "3.12"]
	include:
	- python: "3.8"
	dependencies: oldest
	- python: "3.12"
	dependencies: latest
	# test on macos-13 (x86) using oldest dependencies and python 3.8
	- os: macos-13
	dependencies: oldest
	python: "3.8"
	exclude:
	# don't test on macos-latest (arm64) with oldest dependencies
	- os: macos-latest
	python: "3.8"

	env:
	REQUIREMENTS: env/requirements-build.txt env/requirements-test.txt
	# Used to tag codecov submissions
	OS: ${{ matrix.os }}
	PYTHON: ${{ matrix.python }}

	steps:
	# Cancel any previous run of the test job
	# We pin the commit hash corresponding to v0.5.0, and not pinning the tag
	# because we are giving full access through the github.token.
	- name: Cancel Previous Runs
	uses: styfle/cancel-workflow-action@85880fa0301c86cca9da44039ee3bb12d3bedbfa
	with:
	access_token: ${{ github.token }}

	# Checks-out your repository under $GITHUB_WORKSPACE
	- name: Checkout
	uses: actions/checkout@v4
	with:
	# Need to fetch more than the last commit so that setuptools_scm can
	# create the correct version string. If the number of commits since
	# the last release is greater than this, the version still be wrong.
	# Increase if necessary.
	fetch-depth: 100
	# The GitHub token is preserved by default but this job doesn't need
	# to be able to push to GitHub.
	persist-credentials: false

	# Need the tags so that setuptools_scm can form a valid version number
	- name: Fetch git tags
	run: git fetch origin 'refs/tags/:refs/tags/'

	- name: Setup Python
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python }}

	- name: Collect requirements
	run: \|
	echo "Install Dependente to capture dependencies:"
	python -m pip install dependente==0.3.0
	echo ""
	echo "Capturing run-time dependencies:"
	if [[ "${{ matrix.dependencies }}" == "oldest" ]]; then
	dependente --source install --oldest > requirements-full.txt
	else
	dependente --source install > requirements-full.txt
	fi
	echo ""
	echo "Capturing dependencies from:"
	for requirement in $REQUIREMENTS
	do
	echo " $requirement"
	cat $requirement >> requirements-full.txt
	done
	echo ""
	echo "Collected dependencies:"
	cat requirements-full.txt

	- name: Get the pip cache folder
	id: pip-cache
	run: \|
	echo "dir=$(pip cache dir)" >> $GITHUB_OUTPUT

	- name: Setup caching for pip packages
	uses: actions/cache@v4
	with:
	path: ${{ steps.pip-cache.outputs.dir }}
	key: ${{ runner.os }}-pip-${{ hashFiles('requirements-full.txt') }}

	- name: Install requirements
	run: \|
	python -m pip install --requirement requirements-full.txt

	- name: List installed packages
	run: python -m pip freeze

	- name: Build source and wheel distributions
	run: \|
	make build
	echo ""
	echo "Generated files:"
	ls -lh dist/

	- name: Install the package
	run: python -m pip install --no-deps dist/*.whl

	- name: Run the tests
	run: make test

	- name: Convert coverage report to XML for codecov
	run: coverage xml

	- name: Upload coverage as artifact
	uses: actions/upload-artifact@v4
	with:
	name: coverage_${{ matrix.os }}_${{ matrix.dependencies }}
	path: ./coverage.xml


	#############################################################################
	# Upload coverage report to codecov
	codecov-upload:
	runs-on: ubuntu-latest
	needs: test

	steps:

	- name: Download coverage report artifacts
	# Download coverage reports from every runner.
	# Maximum coverage is achieved by combining reports from every runner.
	# Each coverage file will live in its own folder with the same name as
	# the artifact.
	uses: actions/download-artifact@v4
	with:
	pattern: coverage_*

	- name: List all downloaded artifacts
	run: ls -l -R .

	- name: Upload coverage reports to Codecov
	uses: codecov/codecov-action@v4
	with:
	# Upload all coverage report files
	files: ./coverage_*/coverage.xml
	# Fail the job so we know coverage isn't being updated. Otherwise it
	# can silently drop and we won't know.
	fail_ci_if_error: true
	env:
	CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}

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Make prism kernels return `np.nan` on vertices #389

Workflow file

Make prism kernels return `np.nan` on vertices #389

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Workflow file for this run

Make prism kernels return np.nan on vertices #389

Workflow file

Workflow file for this run

Make prism kernels return `np.nan` on vertices #389