Welcome to the Platypus project

This is the repo for our group project trying to recreate some of the analyses from Branco et al. 2016 ("Continental-level population differentiation and environmental adaptation in the mushroom Suillus brevipes") for the Winter 2018 Ecological Genomics (ECL243) class, taught by Jeffrey Ross-Ibarra and Andrew Whitehead. The original manuscript can be found here.

Contributors

Hannah Nelson, Emily Longman, Elena Suglia

Architecture of this repo

Below is a brief introduction to the directory system and contents of this repo.

1. README.md: describes the contents of the repo
2. Nelson_Longman_Suglia-2018.md: provides an overview of the analyses we performed and the results (figures, tables)
3. Data: here we store the raw data from the original paper
4. Cache: here we store some of the (small) intermediate data files generated during our analyses
5. Code: contains the code (R scripts and bash scripts) to reproduce our analyses
6. Figures: contains the figures we produced for our project
7. Tables: contains the tables we produced for our project