Update 062022

examples/proteus.garnet.gnu.yaml

@@ -105,7 +105,7 @@ packages:
 #  leafletwidget: 
 #    sources:
 #      - key: git:f9147c5b13a69b80bc28d3574f7ba6b2c576aed2
-#        url: https://github.com/erdc-cm/leafletwidget.git
+#        url: https://github.com/erdc/leafletwidget.git
   geojson:
   rdp:
 #  ipython-widgetmode:

examples/proteus.linux.yaml

@@ -9,9 +9,9 @@ extends:
 - file: debian.yaml
 
 parameters:
-  pyver: '3.9'
-  python_site_packages_rel: 'lib/python3.9/site-packages'
-  python_host_packages: '/usr/lib/python3.9/site-packages'
+  pyver: '3.10'
+  python_site_packages_rel: 'lib/python3.10/site-packages'
+  python_host_packages: '/usr/lib/python3.10/site-packages'
 
 # The packages list specifies all the packages that you
 # require installed.  <#> will ensure that all packages
@@ -21,7 +21,7 @@ parameters:
 packages:
   cmake:
   openjpeg: #dependency of chrono
-    version: '2.4'
+    version: '2.5'
   openssl:
   python:
     host: false
@@ -38,7 +38,7 @@ packages:
   mpi4py:
   hdf5:
   petsc:
-    version: 3.14.4
+    version: 3.17.2
     openblas: true
     build_with: |
       parmetis, cmake, blas
@@ -48,7 +48,7 @@ packages:
     link: shared
     debug: false
   petsc4py:
-    version: 3.14.1
+    version: 3.17.2
   tetgen:
   triangle:
   memory_profiler:

examples/proteus.mike.yaml

@@ -12,12 +12,19 @@ parameters:
   pyver: '3.9'
   python_site_packages_rel: 'lib/python3.9/site-packages'
   python_host_packages: '/usr/lib/python3.9/site-packages'
+  HOST_MPI_DIR: /usr/local/packages/mvapich2/2.3.7/intel-2021.5.0/
+  HOST_MPIEXEC: /usr/local/packages/mvapich2/2.3.7/intel-2021.5.0/bin/mpiexec_mpt
+  HOST_MPICC: /usr/local/packages/mvapich2/2.3.7/intel-2021.5.0/bin/mpicc
+  HOST_MPICXX: /usr/local/packages/mvapich2/2.3.7/intel-2021.5.0/bin/mpicxx
+  HOST_MPIF77: /usr/local/packages/mvapich2/2.3.7/intel-2021.5.0/bin/mpif77
+  HOST_MPIF90: /usr/local/packages/mvapich2/2.3.7/intel-2021.5.0/bin/mpif90
   PATH: |
-    /usr/local/compilers/gcc/9.2.0/bin:/usr/local/packages/Modules/3.2.10/bin:/usr/local/bin:/usr/local/sbin:/usr/lib64/qt-3.3/bin:/usr/local/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/usr/local/bin:/opt/ibutils/bin:/opt/dell/srvadmin/bin
+    /usr/local/packages/compilers/gcc/11.2.0/bmraeta/bin:/usr/share/Modules/bin:/usr/local/packages/mvapich2/2.3.7/intel-2021.5.0/bin:/usr/local/packages/Modules/5.0.1/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/usr/local/bin:/home/packages/compilers/intel/mkl/2022.0.2/bin/intel64:/home/packages/compilers/intel/compiler/2022.0.2/linux/lib/oclfpga/bin:/home/packages/compilers/intel/compiler/2022.0.2/linux/bin/intel64:/home/packages/compilers/intel/compiler/2022.0.2/linux/bin:/opt/dell/srvadmin/bin
   LD_LIBRARY_PATH: |
-    /usr/local/compilers/gcc/9.2.0/lib/gcc/x86_64-pc-linux-gnu/9.2.0:/usr/local/compilers/gcc/9.2.0/lib64:/usr/local/compilers/gcc/9.2.0/lib
+    /usr/local/packages/compilers/gcc/11.2.0/bmraeta/lib64:/usr/local/packages/compilers/gcc/11.2.0/bmraeta/lib:/usr/local/packages/mvapich2/2.3.7/intel-2021.5.0/lib:/home/packages/compilers/intel/mkl/2022.0.2/lib/intel64:/home/packages/compilers/intel/compiler/2022.0.2/linux/lib:/home/packages/compilers/intel/compiler/2022.0.2/linux/lib/x64:/home/packages/compilers/intel/compiler/2022.0.2/linux/lib/oclfpga/host/linux64/lib:/home/packages/compilers/intel/compiler/2022.0.2/linux/compiler/lib/intel64_lin
   PROLOGUE: |
-    export SSH_ASKPASS="/usr/libexec/openssh/gnome-ssh-askpass"; export MODULE_VERSION="3.2.10"; export INTEL_LICENSE_FILE="/usr/local/compilers/Intel"; export LESSOPEN="||/usr/bin/lesspipe.sh %s"; export CUDA_NIC_INTEROP="1"; export SSH_CLIENT="167.96.155.143 50614 22"; export CPATH="/usr/local/compilers/gcc/9.2.0/include"; export QTDIR="/usr/lib64/qt-3.3"; export LOADEDMODULES="gcc/9.2.0"; export LANG="en_US.UTF-8"; export QTLIB="/usr/lib64/qt-3.3/lib"; export TERM="xterm-256color"; export LIBRARY_PATH="/usr/local/compilers/gcc/9.2.0/lib64:/usr/local/compilers/gcc/9.2.0/lib"; export QTINC="/usr/lib64/qt-3.3/include"; export G_BROKEN_FILENAMES="1"; export HISTSIZE="90000"; export MANPATH="/usr/local/compilers/gcc/9.2.0/share/man:/usr/local/share/man:"; export MODULESHOME="/usr/local/packages/Modules/3.2.10"; export MODULE_VERSION_STACK="3.2.10"; export LHPC_DEVELGCC="/usr/local/compilers/gcc/9.2.0/easybuild/gcc-9.2.0-easybuild-devel"; export LHPC_ROOTGCC="/usr/local/compilers/gcc/9.2.0"; export LHPC_VERSIONGCC="9.2.0"; export MODULEPATH="/usr/local/packages/Modules/3.2.10/modulefiles/admin:/usr/local/packages/Modules/3.2.10/modulefiles/apps"; export PERL5LIB="/usr/local/lib/perl5"; export _LMFILES_="/usr/local/packages/Modules/3.2.10/modulefiles/apps/gcc/9.2.0"; export SSH_TTY="/dev/pts/7"; export HOSTNAME="mike2"; export SSH_CONNECTION="167.96.155.143 50614 204.90.44.22 22"; export MOABHOMEDIR="/usr/moab"; export HISTCONTROL="ignoredups"; export SHLVL="1"; export CVS_RSH="ssh"; export LS_COLORS="rs=0:di=38;5;27:ln=38;5;51:mh=44;38;5;15:pi=40;38;5;11:so=38;5;13:do=38;5;5:bd=48;5;232;38;5;11:cd=48;5;232;38;5;3:or=48;5;232;38;5;9:mi=05;48;5;232;38;5;15:su=48;5;196;38;5;15:sg=48;5;11;38;5;16:ca=48;5;196;38;5;226:tw=48;5;10;38;5;16:ow=48;5;10;38;5;21:st=48;5;21;38;5;15:ex=38;5;34:*.tar=38;5;9:*.tgz=38;5;9:*.arj=38;5;9:*.taz=38;5;9:*.lzh=38;5;9:*.lzma=38;5;9:*.tlz=38;5;9:*.txz=38;5;9:*.zip=38;5;9:*.z=38;5;9:*.Z=38;5;9:*.dz=38;5;9:*.gz=38;5;9:*.lz=38;5;9:*.xz=38;5;9:*.bz2=38;5;9:*.tbz=38;5;9:*.tbz2=38;5;9:*.bz=38;5;9:*.tz=38;5;9:*.deb=38;5;9:*.rpm=38;5;9:*.jar=38;5;9:*.rar=38;5;9:*.ace=38;5;9:*.zoo=38;5;9:*.cpio=38;5;9:*.7z=38;5;9:*.rz=38;5;9:*.jpg=38;5;13:*.jpeg=38;5;13:*.gif=38;5;13:*.bmp=38;5;13:*.pbm=38;5;13:*.pgm=38;5;13:*.ppm=38;5;13:*.tga=38;5;13:*.xbm=38;5;13:*.xpm=38;5;13:*.tif=38;5;13:*.tiff=38;5;13:*.png=38;5;13:*.svg=38;5;13:*.svgz=38;5;13:*.mng=38;5;13:*.pcx=38;5;13:*.mov=38;5;13:*.mpg=38;5;13:*.mpeg=38;5;13:*.m2v=38;5;13:*.mkv=38;5;13:*.ogm=38;5;13:*.mp4=38;5;13:*.m4v=38;5;13:*.mp4v=38;5;13:*.vob=38;5;13:*.qt=38;5;13:*.nuv=38;5;13:*.wmv=38;5;13:*.asf=38;5;13:*.rm=38;5;13:*.rmvb=38;5;13:*.flc=38;5;13:*.avi=38;5;13:*.fli=38;5;13:*.flv=38;5;13:*.gl=38;5;13:*.dl=38;5;13:*.xcf=38;5;13:*.xwd=38;5;13:*.yuv=38;5;13:*.cgm=38;5;13:*.emf=38;5;13:*.axv=38;5;13:*.anx=38;5;13:*.ogv=38;5;13:*.ogx=38;5;13:*.aac=38;5;45:*.au=38;5;45:*.flac=38;5;45:*.mid=38;5;45:*.midi=38;5;45:*.mka=38;5;45:*.mp3=38;5;45:*.mpc=38;5;45:*.ogg=38;5;45:*.ra=38;5;45:*.wav=38;5;45:*.axa=38;5;45:*.oga=38;5;45:*.spx=38;5;45:*.xspf=38;5;45:"; TMPDIR=${WORKDIR}; export CC=gcc; export CXX=g++; export F77=gfortran; export F90=gfortran; export FC=gfortran; export TERM=xterm; export GIT_SSL_NO_VERIFY=1;
+    export PYTHONHTTPSVERIFY=0; export MPIF77="/usr/local/packages/mvapich2/2.3.7/intel-2021.5.0/bin/mpif77"; export INTEL_LICENSE_FILE="/usr/local/compilers/Intel"; export __MODULES_LMTAG="intel/2021.5.0&auto-loaded"; export CUDA_NIC_INTEROP="1"; export CMAKE_PREFIX_PATH="/usr/local/packages/compilers/gcc/11.2.0/bmraeta/:/usr/local/packages/mvapich2/2.3.7/intel-2021.5.0/:/home/packages/compilers/intel/compiler/2022.0.2/linux/IntelDPCPP"; export XDG_RUNTIME_DIR="/run/user/15887"; export LANG="en_US.UTF-8"; export OCL_ICD_FILENAMES="libintelocl_emu.so:libalteracl.so:/home/packages/compilers/intel/compiler/2022.0.2/linux/lib/x64/libintelocl.so"; export __MODULES_LMPREREQ="mvapich2/2.3.7/intel-2021.5.0&intel/2021.5.0"; export F77="/usr/local/packages/compilers/gcc/11.2.0/bmraeta/bin/gfortran"; export LIBRARY_PATH="/home/packages/compilers/intel/mkl/2022.0.2/lib/intel64:/home/packages/compilers/intel/compiler/2022.0.2/linux/compiler/lib/intel64_lin:/home/packages/compilers/intel/compiler/2022.0.2/linux/lib"; export SHLVL="1"; export XDG_SESSION_ID="559"; export NLSPATH="/home/packages/compilers/intel/mkl/2022.0.2/lib/intel64/locale/%l_%t/%N:/home/packages/compilers/intel/compiler/2022.0.2/linux/compiler/lib/intel64_lin/locale/%l_%t/%N"; export SLURM_MPI_TYPE="pmi2"; export MODULES_RUN_QUARANTINE="LD_LIBRARY_PATH LD_PRELOAD"; export MODULESHOME="/usr/local/packages/Modules/5.0.1"; export CMPLR_ROOT="/home/packages/compilers/intel/compiler/2022.0.2"; export __MODULES_LMCONFLICT="intel/2021.5.0&intel:mvapich2/2.3.7/intel-2021.5.0&mvapich2&intel-mpi&mpich&openmpi"; export CMAKE_PREFIX_PATH_modshare="/home/packages/compilers/intel/compiler/2022.0.2/linux/IntelDPCPP:1:/usr/local/packages/mvapich2/2.3.7/intel-2021.5.0/:1:/usr/local/packages/compilers/gcc/11.2.0/bmraeta/:1"; export CC="/usr/local/packages/compilers/gcc/11.2.0/bmraeta/bin/gcc"; export HISTSIZE="90000"; export MPIF90="/usr/local/packages/mvapich2/2.3.7/intel-2021.5.0/bin/mpif90"; export TERM="xterm-256color"; export S_COLORS="auto"; export __MODULES_SHARE_MANPATH=":1"; export MPICXX="/usr/local/packages/mvapich2/2.3.7/intel-2021.5.0/bin/mpicxx"; export MPICC="/usr/local/packages/mvapich2/2.3.7/intel-2021.5.0/bin/mpicc"; export LD_LIBRARY_PATH_modshare="/usr/local/packages/compilers/gcc/11.2.0/bmraeta/lib64:1:/home/packages/compilers/intel/compiler/2022.0.2/linux/lib:1:/usr/local/packages/mvapich2/2.3.7/intel-2021.5.0/lib:1:/home/packages/compilers/intel/compiler/2022.0.2/linux/lib/x64:1:/home/packages/compilers/intel/compiler/2022.0.2/linux/compiler/lib/intel64_lin:1:/usr/local/packages/compilers/gcc/11.2.0/bmraeta/lib:1:/home/packages/compilers/intel/mkl/2022.0.2/lib/intel64:1:/home/packages/compilers/intel/compiler/2022.0.2/linux/lib/oclfpga/host/linux64/lib:1"; export DBUS_SESSION_BUS_ADDRESS="unix:path=/run/user/15887/bus"; export MODULEPATH="/usr/local/packages/Modules/default/modulefiles/linux-rhel8-icelake"; export __MODULES_LMALTNAME="intel/2021.5.0&as|intel/default&as|intel/latest:mvapich2/2.3.7/intel-2021.5.0&as|mvapich2/default&as|mvapich2/latest&as|mvapich2/2.3.7/default&as|mvapich2/2.3.7/latest"; export SQUEUE_FORMAT2="jobid:11,partition:11,name,username:10,statecompact:4,timelimit:13,timeused:13,numcpus:6,numnodes:7,reasonlist"; export MKLROOT="/home/packages/compilers/intel/mkl/2022.0.2"; export CXX="/usr/local/packages/compilers/gcc/11.2.0/bmraeta/bin/g++"; export SSH_TTY="/dev/pts/1"; export HOSTNAME="mike1"; export MOABHOMEDIR="/usr/moab"; export FC="/usr/local/packages/compilers/gcc/11.2.0/bmraeta/bin/gfortran"; export MODULES_CMD="/usr/share/Modules/libexec/modulecmd.tcl"; TMPDIR=${WORKDIR}; export CC=gcc; export CXX=g++; export F77=gfortran; export F90=gfortran; export FC=gfortran; export TERM=xterm; export GIT_SSL_NO_VERIFY=1;
+
 
 # The packages list specifies all the packages that you
 # require installed.  <#> will ensure that all packages
@@ -49,7 +56,7 @@ packages:
     use: openblas-lapack
   daetk:
   mpi:
-    use: mpich
+    use: host-mpi
   mpi4py:
   nose:
   coverage:

pkgs/beniget.yaml

@@ -0,0 +1,9 @@
+extends: [setuptools_package]
+
+dependencies:
+  build: []
+  run: []
+
+sources:
+ - key: tar.gz:ovkuwo4k2bktzyxwa5rh3lj5sxdayrar
+   url: https://files.pythonhosted.org/packages/14/e7/50cbac38f77eca8efd39516be6651fdb9f3c4c0fab8cf2cf05f612578737/beniget-0.4.1.tar.gz

pkgs/chrono/chrono.yaml

@@ -1,8 +1,8 @@
 extends: [cmake_package]
 
 sources:
-- key: tar.gz:gy4bkyjneq4ppfm4zxlqcbpcwefdy3lx
-  url: https://github.com/projectchrono/chrono/archive/6.0.0.tar.gz
+- key: tar.gz:gnmsgrmpy5icjoxsiwgjjwose7ng52i7
+  url: https://github.com/projectchrono/chrono/archive/refs/tags/7.0.3.tar.gz
 
 defaults:
   relocatable: false

pkgs/cmake.yaml

@@ -4,8 +4,8 @@ dependencies:
   build: [zlib, bzip2, curl, openssl, libidn, expat, ncurses]
 
 sources:
-- key: tar.gz:v3hw5s4xkf46wo5wussqzlqzfva6sk4t
-  url: https://github.com/Kitware/CMake/releases/download/v3.20.2/cmake-3.20.2.tar.gz
+- key: tar.gz:2omhyp3xlh5auqa4l7gva5v6isqzme57
+  url: https://github.com/Kitware/CMake/releases/download/v3.22.5/cmake-3.22.5.tar.gz
 
 build_stages:
 - when: platform == 'Darwin'

pkgs/coreutils.yaml

@@ -4,5 +4,5 @@ defaults:
   relocatable: false
 
 sources:
-- key: tar.xz:5rb4uw6pyyreflgli237cipww2co4ipm
-  url: http://ftp.gnu.org/gnu/coreutils/coreutils-8.23.tar.xz
+- key: tar.xz:mgq7iegxrot6p432ljhvbzwrgifmumzx
+  url: http://ftp.gnu.org/gnu/coreutils/coreutils-9.1.tar.xz

pkgs/coverage.yaml

@@ -6,4 +6,4 @@ dependencies:
 
 sources:
 - key: tar.gz:ai4moaahi7ry7ndhkme3gmsvckg4exjp
-  url: https://github.com/nedbat/coveragepy/archive/coverage-5.4.tar.gz
+  url: https://github.com/nedbat/coveragepy/archive/coverage-6.4.1.tar.gz

pkgs/curl.yaml

@@ -19,19 +19,30 @@ when not use_ca_bundle:
 
 defaults:
   use_ca_bundle: false
-
+  test: true
+
 sources:
-  - url: http://curl.haxx.se/download/curl-7.37.0.tar.gz
-    key: tar.gz:dl6tespqw6zufuqodtfmxpasggdziyrs
+  - url: http://curl.haxx.se/download/curl-7.83.1.tar.gz
+    key: tar.gz:sp5szvfyqbswwtufrherfkp5betvaftn
+
+#sources:
+#  - url: http://curl.haxx.se/download/curl-7.37.0.tar.gz
+#    key: tar.gz:dl6tespqw6zufuqodtfmxpasggdziyrs
 
 build_stages:
+- when: test
+  name: configure
+  mode: override
+  extra: ['--with-openssl']
+
 - when: use_ca_bundle
   name: configure
   mode: override
-  extra: ['--with-ca-bundle=${CA_BUNDLE_DIR}/etc/ca-bundle/ca-bundle.crt']
+  extra: ['--with-ca-bundle=${CA_BUNDLE_DIR}/etc/ca-bundle/ca-bundle.crt','--with-openssl']
 
-- name: install_mk-ca-bundle.pl
+- when: use_ca_bundle
+  name: install_mk-ca-bundle.pl
   after: install
   handler: bash
   bash:
-    cp lib/mk-ca-bundle.pl ${ARTIFACT}/lib/
+    cp lib/mk-ca-bundle.pl ${ARTIFACT}/lib/

pkgs/cython.yaml

@@ -5,5 +5,11 @@ dependencies:
   run: []
 
 sources:
-- key: tar.gz:4lry4hyfolffjvqilxz55sfwa7ja5akr
-  url: https://github.com/cython/cython/archive/0.29.21.tar.gz
+- key: tar.gz:2avg5ymeabartia5f7m52hzn3ftfx73p
+  url: https://github.com/cython/cython/archive/0.29.30.tar.gz
+
+when_build_dependency:
+  - prepend_path: PATH
+    value: ${ARTIFACT}/bin
+  - prepend_path: PYTHONPATH
+    value: '${ARTIFACT}/lib/python{{pyver}}/site-packages'

pkgs/daetk/daetk.yaml

@@ -5,20 +5,24 @@ dependencies:
   build: [petsc, parmetis, mpi]
 
 defaults:
-  petscversion: '3.7.5'
+  petscversion: '3.17.2'
 
 when petscversion == '3.7.5':
   sources:
   - key: tar.gz:ggkr3upxu74syj5bq22fx4ha2ewzzyun
-    url: https://github.com/erdc-cm/daetk/archive/1.0.0.tar.gz
+    url: https://github.com/erdc/daetk/archive/1.0.0.tar.gz
 when petscversion == '3.6.1':
   sources:
-  - url: https://github.com/erdc-cm/daetk.git
+  - url: https://github.com/erdc/daetk.git
     key: git:9c4107d441bc9a0e1d5a603f79874997062349e3
 when petscversion == '3.5.2':
   sources:
-  - url: https://github.com/erdc-cm/daetk.git
+  - url: https://github.com/erdc/daetk.git
     key: git:e05b9975a2d413148ce122a274be675b27f9450d
+when petscversion == '3.17.2':
+  sources:
+  - key: tar.gz:rpgdo62zz6sfqmb2psc3khnxkgychozw
+    url: https://github.com/erdc/daetk/archive/refs/tags/1.0.2.tar.gz
 
 build_stages:
 - when: platform == 'Darwin'

pkgs/eigen.yaml

@@ -5,5 +5,5 @@ defaults:
   relocatable: false
 
 sources:
-- key: tar.bz2:b6s4v7ty6zwswua3imawqwahbvjlur55
-  url: https://gitlab.com/libeigen/eigen/-/archive/3.3.9/eigen-3.3.9.tar.bz2
+- key: tar.bz2:wtazqrqoxjxsru2istr2k4ijtcaykfiq
+  url: https://gitlab.com/libeigen/eigen/-/archive/3.4.0/eigen-3.4.0.tar.bz2

pkgs/expat.yaml

@@ -1,8 +1,10 @@
 extends: [autotools_package]
 
 sources:
-- key: tar.gz:uaforjvznnr2hein3qiqbmnh55inyjw4
-  url: https://github.com/libexpat/libexpat/releases/download/R_2_4_1/expat-2.4.1.tar.gz
+- key: tar.gz:hghw3fn7qcgtcchcovd3g4wljlenyiuy
+  url: https://github.com/libexpat/libexpat/releases/download/R_2_4_8/expat-2.4.8.tar.gz
+
+
 
 build_stages:
 - name: setEnv

pkgs/findutils.yaml

@@ -4,5 +4,5 @@ defaults:
   relocatable: false
 
 sources:
-- key: tar.gz:inhtfulrzpaklzzm7rjxfrx4jsyonapy
-  url: http://ftp.heanet.ie/mirrors/ftp.gnu.org/gnu/findutils/findutils-4.4.2.tar.gz
+- key: tar.xz:uk73rqe5intxb3oft5ipusb6pbnrmgr3
+  url: http://ftp.heanet.ie/mirrors/ftp.gnu.org/gnu/findutils/findutils-4.9.0.tar.xz

pkgs/gast.yaml

@@ -0,0 +1,9 @@
+extends: [setuptools_package]
+
+dependencies:
+  build: []
+  run: []
+
+sources:
+ - key: tar.gz:z67kewba4zj27hd5dad7mwoobifjyzhs
+   url: https://files.pythonhosted.org/packages/48/a3/0bd844c54ae8141642088b7ae09dd38fec2ec7faa9b7d25bb6a23c1f266f/gast-0.5.3.tar.gz

pkgs/gdbm.yaml

@@ -4,8 +4,8 @@ defaults:
   relocatable: false
 
 sources:
-- key: tar.gz:g7wreikbek4xfymkbwkjsubz4v3uqgiz
-  url: https://ftp.gnu.org/gnu/gdbm/gdbm-1.19.tar.gz
+- key: tar.gz:osyqqhjb77ytvzf5pqlolvxfassme334
+  url: https://ftp.gnu.org/gnu/gdbm/gdbm-1.23.tar.gz
 
 build_stages:
 - name: setEnv

pkgs/gmsh.yaml

@@ -1,8 +1,8 @@
 extends: [cmake_package]
 
 sources:
-- key: tar.gz:oyg33qds5kr4qlignrn2hmdovtotgbhl
-  url: https://gmsh.info/src/gmsh-4.8.4-source.tgz
+- key: tar.gz:6r7je7ze6nkphdke4jwcdisjlrgnxxb5
+  url: http://gmsh.info/src/gmsh-4.10.4-source.tgz
 
 defaults:
   relocatable: false

pkgs/gzip.yaml

@@ -4,5 +4,6 @@ defaults:
   relocatable: false
 
 sources:
-- key: tar.gz:s7vyhn3d3hs22nptkh7fkf7gw4ksdv5k
-  url: http://ftp.heanet.ie/mirrors/ftp.gnu.org/gnu/gzip/gzip-1.6.tar.gz
+- key: tar.xz:zzpahziz6y36d6auaenm4noe7b5thqf3
+  url: https://ftp.gnu.org/gnu/gzip/gzip-1.12.tar.xz
+

pkgs/h5py.yaml

@@ -5,16 +5,16 @@ dependencies:
   run: [numpy, mpi4py, pkgconfig, cython]
 
 sources:
-- key: tar.gz:gg6udne5mpjj4xmzwwzypiirijau4mzu
-  url: https://github.com/h5py/h5py/releases/download/3.1.0/h5py-3.1.0.tar.gz
+- key: tar.gz:elg4feze6oiqfsevikcfwared6gfu6yy
+  url: https://github.com/h5py/h5py/releases/download/3.7.0/h5py-3.7.0.tar.gz
 
 build_stages:
 - name: install
   after: setup_dirs
   mode: replace
   handler: bash
   bash: |
-       HDF5_VERSION=1.12.0 HDF5_MPI="ON"  \
+       HDF5_VERSION=1.13.1 HDF5_MPI="ON"  \
        CC=${MPICC} CXX=${MPICXX} ${PYTHON} -c 'import setuptools; __file__="setup.py"; exec(open(__file__).read())' \
        ${SETUPTOOLS_PACKAGE_EXTRA_OPTIONS} \
        install \

pkgs/hdf5/hdf5.yaml

@@ -3,9 +3,9 @@ dependencies:
   build: [mpi, zlib, szip]
 
 sources:
-- key: tar.gz:uyw4wj3gldfxrztzlxjjx6jg5v5jxrhn
-  url: https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.12/hdf5-1.12.0/src/hdf5-1.12.0.tar.gz
-
+- key: tar.gz:aulflbzrauis66xmzvpvtkzb6npx6sih
+  url: https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.13/hdf5-1.13.1/src/hdf5-1.13.1.tar.gz
+  
 defaults:
   # /bin/h5pcc contains hard-coded path
   relocatable: false

pkgs/ipython-widgetmode.yaml

@@ -5,6 +5,6 @@ dependencies:
   run: [ipython]
 
 sources:
-  - url: https://github.com/erdc-cm/ipython-widgetmode
+  - url: https://github.com/erdc/ipython-widgetmode
     key: git:496b99eb35b9f6e322be41212be107f5a88c1de1
 

pkgs/lapack.yaml

@@ -10,7 +10,7 @@
 extends: [cmake_package]
 
 sources:
-- url: http://www.netlib.org/lapack/lapack-3.4.2.tgz
+- url: http://www.netlib.org/lapack/lapack-3.10.01.tar.gz
   key: tar.gz:mctf3kxrn3brka2gowkcmgfcemcsd2t2
 
 defaults:

pkgs/leafletwidget.yaml

@@ -9,7 +9,7 @@ dependencies:
     - ipython
 
 sources:
-  - url: https://github.com/erdc-cm/leafletwidget
+  - url: https://github.com/erdc/leafletwidget
     key: git:f9147c5b13a69b80bc28d3574f7ba6b2c576aed2
 
 

pkgs/libidn.yaml

@@ -1,8 +1,8 @@
 extends:  [autotools_package]
 
 sources:
-- key: tar.gz:ist2vnrvxnzbz3xwx3wmjve57umupazf
-  url: http://ftp.gnu.org/gnu/libidn/libidn-1.33.tar.gz
+- key: tar.gz:3yalqqhxk7gtxmkn3gra2wjwi4zdlxol
+  url: http://ftp.gnu.org/gnu/libidn/libidn-1.38.tar.gz
 
 defaults:
   relocatable: false

pkgs/libxml2.yaml

@@ -12,8 +12,8 @@ build_stages:
     extra: ['--without-python']
 
 sources:
-  - url: http://xmlsoft.org/sources/libxml2-2.9.1.tar.gz
-    key: tar.gz:7u6gjs3g6lcouj7jgtjhlecnslhmjffi
+  - url: http://xmlsoft.org/sources/libxml2-2.9.9.tar.gz
+    key: tar.gz:st5xbcibipr4mve7ezoo5e7mazgibkcm
 
 when_build_dependency:
   - prepend_path: PKG_CONFIG_PATH

pkgs/m4.yaml

@@ -7,8 +7,8 @@ defaults:
   relocatable: false
 
 sources:
-  - url: http://ftp.gnu.org/gnu/m4/m4-1.4.17.tar.bz2
-    key: tar.bz2:rzhb7frzgijw5vc5zvnpwddoen7jnjx4
+- key: tar.xz:moxn4xdngo3ntmjvchgqxywkybdpfzyp
+  url: http://ftp.gnu.org/gnu/m4/m4-1.4.19.tar.xz
 
 when_build_dependency:
   - prepend_path: PATH

pkgs/memory_profiler.yaml

@@ -6,5 +6,5 @@ dependencies:
         - psutil
 
 sources:
-- key: tar.gz:3rajxz5qjjc7e7gpnny36rnpl6owx2ku
-  url: https://github.com/pythonprofilers/memory_profiler/archive/0.58.0.tar.gz
+- key: tar.gz:nijinfir23hlzmu3og5cngcwowsy4fxa
+  url: https://files.pythonhosted.org/packages/06/dd/7308a8ef1902db9d81c5bc226befe346a87ed8787caff00b8d91ed9f3b86/memory_profiler-0.60.0.tar.gz

pkgs/meson.yaml

@@ -0,0 +1,15 @@
+extends: [setuptools_package]
+
+dependencies:
+  build: []
+  run: []
+
+sources:
+ - key: tar.gz:u5tj4tcbccygw5b5k7gf2zbslengm57p
+   url: https://files.pythonhosted.org/packages/89/e4/c7d8d2515d24c333fbf4fc57596b4ec8f036e215675ad0698e0f0391438e/meson-0.62.2.tar.gz
+
+when_build_dependency:
+  - prepend_path: PATH
+    value: ${ARTIFACT}/bin
+  - prepend_path: PYTHONPATH
+    value: '${ARTIFACT}/lib/python{{pyver}}/site-packages'