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The Differential Algebraic Equation Toolkit

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Name		Name	Last commit message	Last commit date
Latest commit History 40 Commits
config		config
lapack		lapack
newDaspk		newDaspk
pdetk		pdetk
pete/pete-2.1.0		pete/pete-2.1.0
AnalyticalJacobian.cpp		AnalyticalJacobian.cpp
AnalyticalJacobian.h		AnalyticalJacobian.h
BandColMat.cpp		BandColMat.cpp
BandColMat.h		BandColMat.h
BandedNumericalJacobian.h		BandedNumericalJacobian.h
BiCGstab.cpp		BiCGstab.cpp
BiCGstab.h		BiCGstab.h
CMRVec.h		CMRVec.h
CMRVecBlas.h		CMRVecBlas.h
CMRVecBlasd.cpp		CMRVecBlasd.cpp
CMRVecBlasd.h		CMRVecBlasd.h
CMRVecBlass.cpp		CMRVecBlass.cpp
CMRVecBlass.h		CMRVecBlass.h
CMRVecConstIterator.h		CMRVecConstIterator.h
CMRVecDefinitions.h		CMRVecDefinitions.h
CMRVecIndex.cpp		CMRVecIndex.cpp
CMRVecIndex.h		CMRVecIndex.h
CMRVecIterator.h		CMRVecIterator.h
CMRVecOperators.h		CMRVecOperators.h
Chronograph.cpp		Chronograph.cpp
Chronograph.h		Chronograph.h
DASPK.cpp		DASPK.cpp
DASPK.h		DASPK.h
DaeDefinition.cpp		DaeDefinition.cpp
DaeDefinition.h		DaeDefinition.h
DaetkPetscAnalyticalJacobian.cpp		DaetkPetscAnalyticalJacobian.cpp
DaetkPetscAnalyticalJacobian.h		DaetkPetscAnalyticalJacobian.h
DaetkPetscLinearSolver.cpp		DaetkPetscLinearSolver.cpp
DaetkPetscLinearSolver.h		DaetkPetscLinearSolver.h
DaetkPetscMat.cpp		DaetkPetscMat.cpp
DaetkPetscMat.h		DaetkPetscMat.h
DaetkPetscNumericalJacobian.cpp		DaetkPetscNumericalJacobian.cpp
DaetkPetscNumericalJacobian.h		DaetkPetscNumericalJacobian.h
DaetkPetscSys.cpp		DaetkPetscSys.cpp
DaetkPetscSys.h		DaetkPetscSys.h
DaetkPetscVec.cpp		DaetkPetscVec.cpp
DaetkPetscVec.h		DaetkPetscVec.h
DaetkPetscVecBlas.cpp		DaetkPetscVecBlas.cpp
DaetkPetscVecBlas.h		DaetkPetscVecBlas.h
DaetkPetscVecConstIterator.h		DaetkPetscVecConstIterator.h
DaetkPetscVecIndex.h		DaetkPetscVecIndex.h
DaetkPetscVecIterator.h		DaetkPetscVecIterator.h
DaetkPetscVecOperators.h		DaetkPetscVecOperators.h
DaspkJac.cpp		DaspkJac.cpp
DaspkJac.h		DaspkJac.h
DaspkPsol.cpp		DaspkPsol.cpp
DaspkPsol.h		DaspkPsol.h
DaspkRes.cpp		DaspkRes.cpp
DaspkRes.h		DaspkRes.h
DataCollector.cpp		DataCollector.cpp
DataCollector.h		DataCollector.h
DataFile.cpp		DataFile.cpp
DataFile.h		DataFile.h
Definitions.h		Definitions.h
DtHistoryDataFile.cpp		DtHistoryDataFile.cpp
DtHistoryDataFile.h		DtHistoryDataFile.h
ErrorNorms.cpp		ErrorNorms.cpp
ErrorNorms.h		ErrorNorms.h
FLCBDF.cpp		FLCBDF.cpp
FLCBDF.h		FLCBDF.h
FLCBDF_lite.cpp		FLCBDF_lite.cpp
FLCBDF_lite.h		FLCBDF_lite.h
FullDataFile.cpp		FullDataFile.cpp
FullDataFile.h		FullDataFile.h
FullDataFileForRichExtrap.cpp		FullDataFileForRichExtrap.cpp
FullDataFileForRichExtrap.h		FullDataFileForRichExtrap.h
FullDirectSolver.cpp		FullDirectSolver.cpp
FullDirectSolver.h		FullDirectSolver.h
FullNumericalJacobian.h		FullNumericalJacobian.h
GlobalDaeDef.cpp		GlobalDaeDef.cpp
GlobalDaeDef.h		GlobalDaeDef.h
IntVec.cpp		IntVec.cpp
IntVec.h		IntVec.h
Integrator.cpp		Integrator.cpp
Integrator.h		Integrator.h
Jacobian.cpp		Jacobian.cpp
Jacobian.h		Jacobian.h
LICENSE.md		LICENSE.md
LaBandedDirectSolver.cpp		LaBandedDirectSolver.cpp
LaBandedDirectSolver.h		LaBandedDirectSolver.h
LaFullCholeskySolver.cpp		LaFullCholeskySolver.cpp
LaFullCholeskySolver.h		LaFullCholeskySolver.h
LaFullDirectSolver.cpp		LaFullDirectSolver.cpp
LaFullDirectSolver.h		LaFullDirectSolver.h
LiBandedDirectSolver.cpp		LiBandedDirectSolver.cpp
LiBandedDirectSolver.h		LiBandedDirectSolver.h
LinearOperator.cpp		LinearOperator.cpp
LinearOperator.h		LinearOperator.h
LinearSolver.cpp		LinearSolver.cpp
LinearSolver.h		LinearSolver.h
Mat.h		Mat.h
ModifiedNewton.cpp		ModifiedNewton.cpp
ModifiedNewton.h		ModifiedNewton.h
Newton.cpp		Newton.cpp
Newton.h		Newton.h

Repository files navigation

To build the library (libdaetk.a) you need to set the following
environment variables:

DAETK_DIR
DAETK_ARCH
PETSC_DIR
PETSC_ARCH

For example:

setenv DAETK_DIR ${HOME}/src/daetk
setenv DAETK_ARCH linux
setenv PETSC_DIR ${HOME}/src/petsc
setenv PETSC_ARCH linux-gnu-c-debug

You can then build daetk by typing make. You may also want to build pdetk with 'cd pdetk; make'.

The various compilation parameters can be set in config/${DAETK_ARCH} if
you want to change from the options I include or add support for a new
compiler/OS. Since different compilers have different ways of building
archives there is also a config/${DAETK_ARCH}.archive file to specify the
make rule for building an archive.  If you have an optimized
scientific library with BLAS and LAPACK routines you will likely want
to copy the linux config files as they don't indlude sample
implementations of the LAPACK routines and their dependencies.

To build an application it will likely be helpful to download the example in
daeExamples.tar.gz first and compile it with your enivironment configured as
above.  If you have something like

~/myCode/daetk

then try

cd ~/myCode
tar xzvf daeExamples.tar.gz
cd daeExamples/rich/1d/sand
make 
driver



---Patform Notes---
---darwin---
Installed gfortran and openmpi from fink
Installed petsc-2.3.3-p6:
PETSC configure command:  ./config/configure.py --CC=mpicc --FC=mpif90 --with-mpi=1 --with-mpi-compilers=1 --with-shared
used gfortran from fink (/sw/bin/gfortran)
setenv PETSC_ARCH darwin8.10.1-c-debug
setenv DAETK_ARCH darwin
---linux---
Installed g++,gfortran, and openmpi (I installed rpm's via yum)
Installed petsc-2.3.3-p6:
PETSC configure command: ./config/configure.py --CC=mpicc --FC=mpif90 --with-mpi=1 --with-mpi-compilers=1 --with-shared
setenv PETC_ARCH linux-gnu-c-debug
setenv DAETK_ARCH linux