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Improved CSV output
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@epruesse epruesse released this 31 Jul 23:50
v1.7.0
eb68727

The old --meta-fmt CSV option has been deprecated in favor of having multiple output modules active. To get CSV output as well as the aligned sequences, you can now write -o aligned.fasta.gz -o aligned.csv. The fields that are written to CSV, FASTA or ARB output types can be configured with the --field (-f) parameter. SINA can now also show a list of all fields available in a reference ARB database using --arb-list-fields FILENAME.

Changelog:

  • allow multiple output types at once
  • add dedicated CSV/TSV output (#10)
  • fix loading reference database from running ARB (#76 )
  • report errors when sequence can't be read from ARB (#73)
  • add --arb-list-fields listing fields available in ARB
    database
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