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Remove pkgdown config as_is = TRUE #269

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merged 3 commits into from
Jun 21, 2024
Merged

Remove pkgdown config as_is = TRUE #269

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cd6e843
Remove pkgdown as_is = TRUE
jamesmbaazam Jun 21, 2024
a17d220
Update WORDLIST
jamesmbaazam Jun 21, 2024
36b0865
Add NEWS item
jamesmbaazam Jun 21, 2024
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4 changes: 4 additions & 0 deletions NEWS.md
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Original file line number Diff line number Diff line change
@@ -1,5 +1,9 @@
# epichains (development version)

## Package

- Removed the `as_is = TRUE` setting in vignette YAML headers to avoid partial incompatibility with incoming pkgdown versions.

# epichains 0.1.0

We are excited to announce the first minor release of `{epichains}`.
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6 changes: 6 additions & 0 deletions inst/WORDLIST
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Expand Up @@ -2,6 +2,7 @@ Blumberg
Borel
CMD
COVID
Codecov
Epiverse
Eq
Inf
Expand All @@ -13,6 +14,7 @@ Poisson
R's
TransPhylo
Vukosi
YAML
Zhian
borel
bpmodels
Expand All @@ -28,10 +30,12 @@ fn
frac
geosocial
geq
gh
infectee
infectees
infector
infectors
io
json
kS
linelist
Expand All @@ -45,12 +49,14 @@ outbreaker
outbreakr
packagename
parameterised
pkgdown
poisson
rborel
ringbp
simulacr
simulist
superspreading
svg
th
truncdist
unnormalised
2 changes: 0 additions & 2 deletions vignettes/branching_process_literature.Rmd
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Expand Up @@ -4,8 +4,6 @@ output:
bookdown::html_vignette2:
fig_caption: yes
code_folding: show
pkgdown:
as_is: true
bibliography: branching_process_literature.json
link-citations: true
vignette: >
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2 changes: 0 additions & 2 deletions vignettes/design-principles.Rmd
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Original file line number Diff line number Diff line change
@@ -1,8 +1,6 @@
---
title: "Design Principles for {epichains}"
subtitle: "An R package for simulating, handling, and analysing transmission chains in R"
pkgdown:
as_is: true
bibliography: references.json
output: rmarkdown::html_vignette
vignette: >
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2 changes: 0 additions & 2 deletions vignettes/projecting_incidence.Rmd
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Expand Up @@ -5,8 +5,6 @@ output:
bookdown::html_vignette2:
fig_caption: yes
code_folding: show
pkgdown:
as_is: true
bibliography: references.json
link-citations: true
vignette: >
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