Merge branch 'main' into unexport-funcs

.github/workflows/R-CMD-check.yaml

@@ -61,7 +61,7 @@ jobs:
       _R_CHECK_LENGTH_COLON_: true
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - uses: r-lib/actions/setup-pandoc@v2
 

.github/workflows/lint-changed-files.yaml

@@ -17,7 +17,7 @@ jobs:
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - uses: r-lib/actions/setup-r@v2
         with:

.github/workflows/pkgdown.yaml

@@ -52,7 +52,7 @@ jobs:
     permissions:
       contents: write
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - uses: r-lib/actions/setup-pandoc@v2
 
@@ -71,7 +71,7 @@ jobs:
 
       - name: Deploy to GitHub pages 🚀
         if: github.event_name != 'pull_request'
-        uses: JamesIves/github-pages-deploy-action@4.1.4
+        uses: JamesIves/github-pages-deploy-action@v4.5.0
         with:
           # We clean on releases because we want to remove old vignettes,
           # figures, etc. that have been deleted from the `main` branch.

.github/workflows/test-coverage.yaml

@@ -33,7 +33,7 @@ jobs:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - uses: r-lib/actions/setup-r@v2
         with:

.github/workflows/update-citation-cff.yaml

@@ -22,7 +22,7 @@ jobs:
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
       - uses: r-lib/actions/setup-r@v2
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:

CITATION.cff

@@ -1,5 +1,5 @@
 # -----------------------------------------------------------
-# CITATION file created with {cffr} R package, v0.5.0
+# CITATION file created with {cffr} R package, v1.0.0
 # See also: https://docs.ropensci.org/cffr/
 # -----------------------------------------------------------
 
@@ -13,7 +13,7 @@ version: 0.0.0.9999
 abstract: Provides methods to simulate and analyse the size and length of branching
   processes with an arbitrary offspring distribution. These can be used, for example,
   to analyse the distribution of chain sizes or length of infectious disease outbreaks,
-  as discussed in Farrington et al. (2003) <doi:10.1093/biostatistics/4.2.279>.
+  as discussed in Farrington et al. (2003) <https://doi.org/10.1093/biostatistics/4.2.279>.
 authors:
 - family-names: Azam
   given-names: James M.
@@ -53,11 +53,10 @@ references:
   url: https://www.R-project.org/
   authors:
   - name: R Core Team
-  location:
-    name: Vienna, Austria
-  year: '2024'
   institution:
     name: R Foundation for Statistical Computing
+    address: Vienna, Austria
+  year: '2024'
   version: '>= 3.6.0'
 - type: software
   title: checkmate
@@ -77,22 +76,20 @@ references:
   notes: Imports
   authors:
   - name: R Core Team
-  location:
-    name: Vienna, Austria
-  year: '2024'
   institution:
     name: R Foundation for Statistical Computing
+    address: Vienna, Austria
+  year: '2024'
 - type: software
   title: utils
   abstract: 'R: A Language and Environment for Statistical Computing'
   notes: Imports
   authors:
   - name: R Core Team
-  location:
-    name: Vienna, Austria
-  year: '2024'
   institution:
     name: R Foundation for Statistical Computing
+    address: Vienna, Austria
+  year: '2024'
 - type: software
   title: bookdown
   abstract: 'bookdown: Authoring Books and Technical Documents with R Markdown'
@@ -163,6 +160,10 @@ references:
   - family-names: Dunnington
     given-names: Dewey
     orcid: https://orcid.org/0000-0002-9415-4582
+  - family-names: Brand
+    given-names: Teun
+    name-particle: van den
+    orcid: https://orcid.org/0000-0002-9335-7468
   year: '2024'
 - type: software
   title: knitr
@@ -238,7 +239,7 @@ references:
   title: spelling
   abstract: 'spelling: Tools for Spell Checking in R'
   notes: Suggests
-  url: https://docs.ropensci.org/spelling/
+  url: https://ropensci.r-universe.dev/spelling
   repository: https://CRAN.R-project.org/package=spelling
   authors:
   - family-names: Ooms