v5.2.4

Added

• meta keys src_xam and src_xai pointing to the input XAM/XAI files.
• src_xam and src_xai will be set to null if multiple XAM per sample are provided, if files are hosted in S3 or if the files are altered by ingress.nf.

Changed

• Updated wf-common to sha4a766a8333dbb72086b117c6eefba08e8ef7d76e to improve report layouts in EPI2ME Desktop with ezCharts (v0.10.2).
• Compare only SQ SN,LN,M5 when determining if collection of XAM headers have been aligned to conflicting references.
• Automatically emit the igv.json file upon generation.

Fixed

• Resumed workflow leading to mismatched (BAM, BAI) validateIndex pairs when calling xam_ingress more than once.
• Broken Markdown rendering of install and run section of README in desktop application.