Merge branch 'tag293' into 'dev'

bump version See merge request epi2melabs/workflows/wf-metagenomics!181
epi2me-labs · Mar 22, 2024 · 6636bc9 · 6636bc9
2 parents e798771 + 5de8f1f
commit 6636bc9
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -5,7 +5,7 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
 
-## [Unreleased]
+## [v2.9.3]
 ### Fixed
 - Files that are empty following the fastcat filtering are discarded from downstream analyses.
 

diff --git a/bin/workflow_glue/check_sample_sheet.py b/bin/workflow_glue/check_sample_sheet.py
@@ -51,7 +51,7 @@ def main(args):
         with open(args.sample_sheet, "r", encoding=encoding) as f:
             try:
                 # Excel files don't throw any error until here
-                csv.Sniffer().sniff(f.read(100))
+                csv.Sniffer().sniff(f.readline())
                 f.seek(0)  # return to initial position again
             except Exception as e:
                 # Excel fails with UniCode error

diff --git a/nextflow.config b/nextflow.config
@@ -120,7 +120,7 @@ params {
         ]
         agent = null
         container_sha = "sha44a6dacff5f2001d917b774647bb4cbc1b53bc76"
-        common_sha = "sha362c808b4f22ce66f940bef192a1316aec5f4c75"
+        common_sha = "sha645176f98b8780851f9c476a064d44c2ae76ddf6"
         container_sha_amr = "sha2c763f19fac46035437854f1e2a5f05553542a78"
     }
 }
@@ -133,7 +133,7 @@ manifest {
     description     = 'Identification of the origin of single reads from both amplicon-targeted and shotgun metagenomics sequencing.'
     mainScript      = 'main.nf'
     nextflowVersion = '>=23.04.2'
-    version         = 'v2.9.2'
+    version         = 'v2.9.3'
 }