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Add support for libyt#209

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matthewturk wants to merge 144 commits intoenzo-project:mainenzo-project/enzo-dev:mainfrom data-exp-lab:libytdata-exp-lab/enzo-dev:libytCopy head branch name to clipboard

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Commits on Oct 12, 2022

• Add config option for libyt

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• Add conda-based makefile

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Commits on Oct 23, 2022

• Add initial libyt hooks

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Commits on Oct 24, 2022

• Start filling out the libyt functions

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Commits on Apr 17, 2023

• Add empty interactive mode

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Commits on Apr 18, 2023

• Add call to stub

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• first bit of mapping for libyt

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Commits on Apr 19, 2023

• Add mapping system for libyt parameters

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• Continue mapping

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• Update libyt initialize/finalize/interactive API.

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• Fix order of includes

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• Add initialize call to the interactive mode

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• Merge remote-tracking branch 'data-exp-lab/libyt' into libyt

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• Only include libyt in the one file.

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• Merge remote-tracking branch 'data-exp-lab/libyt' into libyt

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• Align with include header in matt's repo

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• Change include to libyt.h

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Commits on Apr 20, 2023

• More libyt updates

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• Merge remote-tracking branch 'data-exp-lab/libyt' into libyt

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Commits on Apr 21, 2023

• Initialize interface before enzo includes

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• Merge remote-tracking branch 'data-exp-lab/libyt' into libyt

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• Auto stash before merge of "libyt" and "data-exp-lab/libyt"

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• Update parameter setting

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• Merge branch 'main' of github.com:enzo-project/enzo-dev into libyt

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• Update finder functions

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• Move everything into the single libyt interface call

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• Merge remote-tracking branch 'data-exp-lab/libyt' into libyt

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Commits on Apr 24, 2023

• First pass at grid::ConvertToLibyt

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• Merge remote-tracking branch 'data-exp-lab/libyt' into libyt

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Commits on Apr 25, 2023

• Refer to NumberOfGhostZones parameter

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• Fix dtype setting

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• minor changes

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• Continue with libyt calls

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• Merge remote-tracking branch 'data-exp-lab/libyt' into libyt

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• Starting to move back to idiomatic enzoisms

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• draft libyt hierarchy

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• Merge remote-tracking branch 'data-exp-lab/libyt' into libyt

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• Almost done with enzo-specific code

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• Adding to make config objects

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• Merge remote-tracking branch 'data-exp-lab/libyt' into libyt

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Commits on Apr 26, 2023

• Call libyt API yt_set_Parameters.

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• Need libyt.h to compile and typo when calling Grid::ConvertToLibyt

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• Originally I was trying to match the include in data_exp_lab.

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• Bug, params initialize through malloc, no guarantee that pointer is valid.

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• Recursion only has 8 inputs, compile success.

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• Add TODO list and includes whole libyt workflow.

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• Add more comments.

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• Align how conda env includes libyt header.

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• Bug, this is due to we allocate params through malloc.

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• Merge branch 'libyt' into libyt-PR

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• Fix compilation issues

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Commits on May 2, 2023

• Update the comments and remove printing some debug stuff.

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Commits on May 3, 2023

• Remove Make.mach.libyt

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• Merge branch 'libyt' into libyt-PR

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• Merge pull request #1 from cindytsai/libyt-PR

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Commits on May 4, 2023

• Merge remote-tracking branch 'data-exp-lab/libyt' into libyt

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• Set index_offset = 1.

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• Merge pull request #2 from cindytsai/libyt-PR

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• Add hydro method

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• Merge remote-tracking branch 'data-exp-lab/libyt' into libyt

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• Remove debug stuff at initialization stage, fix typo while merging.

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• Match how data_exp_lab include libyt header

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• Accidentally changed libyt log to debug mode, change it back

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• Make counter starts at 0.

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Commits on May 5, 2023

• Merge pull request #3 from cindytsai/libyt-PR

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• Merge branch 'libyt-PR' into libyt

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Commits on May 6, 2023

• Find the bug, grid_dimension defined in libyt is active dimension

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• Merge pull request #4 from cindytsai/libyt-PR

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Commits on May 9, 2023

• Use particle array pointers

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• Merge remote-tracking branch 'data-exp-lab/libyt' into libyt

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• Fix bug

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• Merge pull request #5 from cindytsai/libyt

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Commits on May 10, 2023

• Make libyt header to libyt.h, so that it is easier to install.

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• Remove libyt_interactive_mode.h header and initialize the doc.

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• Merge pull request #6 from cindytsai/libyt

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• To make libyt work both in normal mode and interactive mode.

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Commits on May 11, 2023

• Merge pull request #7 from cindytsai/libyt

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Commits on May 25, 2023

• Start writing doc for libyt.

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• Add how it works.

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• Add links.

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Commits on May 26, 2023

• Update how to configure and how to compile.

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• Finished writing the doc

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• They should be in the same line.

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• Update doc/manual/source/user_guide/InSituPythonAnalysis.rst

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• Update doc/manual/source/user_guide/InSituPythonAnalysis.rst

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• Update doc/manual/source/user_guide/InSituPythonAnalysis.rst

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• Update doc/manual/source/user_guide/InSituPythonAnalysis.rst

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• Update doc/manual/source/user_guide/InSituPythonAnalysis.rst

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• Update doc/manual/source/user_guide/InSituPythonAnalysis.rst

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• Update doc/manual/source/user_guide/InSituPythonAnalysis.rst

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• Update doc/manual/source/user_guide/InSituPythonAnalysis.rst

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• Merge pull request #8 from cindytsai/libyt

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Commits on Jun 15, 2023

• Update libyt doc.

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Commits on Jun 16, 2023

• Make sure libyt-no can compile.

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• Make integers-32 or 64 compilable in precision-64.

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• Merge pull request #9 from cindytsai/libyt

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Commits on Jun 19, 2023

• Merge branch 'main' into libyt

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• Merge remote-tracking branch 'data-exp-lab/libyt' into libyt

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• Fix syntax error in doc

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• Fix syntax error in lists' hyperlink.

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• Typo.

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• Merge pull request #10 from cindytsai/libyt

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Commits on Feb 17, 2024

• Update link

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• fix link

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• Update requirements.

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• Update How it works.

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• Fix page layout

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• Update interactive mode.

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• Update reloading script.

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Commits on Feb 18, 2024

• Add Jupyter Notebook and change "you" to "we".

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• Add code snippet for reloading script and jupyter kernel.

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• Merge pull request #11 from cindytsai/libyt

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• Merge remote-tracking branch 'enzo-dev/main' into libyt

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Commits on Feb 19, 2024

• Merge pull request #12 from cindytsai/libyt

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Commits on Feb 21, 2024

• add link to libyt repo.

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• Add code snippet for yt_run_Function/yt_run_FunctionArguments.

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• Add libyt to build page.

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• Update doc/manual/source/user_guide/InSituPythonAnalysis.rst

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• Merge remote-tracking branch 'data-exp-lab/libyt' into libyt

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• Specify the options are for libyt only.

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• Update doc/manual/source/user_guide/InSituPythonAnalysis.rst

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• Merge remote-tracking branch 'data-exp-lab/libyt' into libyt

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• Reloading script used cases.

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• Add more stuff to doing in situ analysis.

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• Merge pull request #13 from cindytsai/libyt

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• Make imported script name a global.

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Commits on Feb 22, 2024

• Explicitly define global libyt_script_name.

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• Update doc.

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• Merge pull request #14 from cindytsai/libyt

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• Update libyt parameter in doc.

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Commits on Feb 29, 2024

• Add libyt-yes/no make option to doc.

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Commits on Mar 1, 2024

• Add option libyt-interactive-yes/no.

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• Add option libyt-reload-yes/no.

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• Add option libyt-jupyter-yes/no.

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• Update doc.

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• Missing space in if.

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• Merge pull request #15 from cindytsai/libyt

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Commits on Mar 7, 2024

• Move NumberOfLibyt* param inside USE_LIBYT clause.

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• Define libyt macros inside ifdef USE_LIBYT

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• Merge pull request #16 from cindytsai/libyt

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• Remove advertising CallInSitulibyt can be called anywhere.

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• Merge pull request #17 from cindytsai/libyt

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