moving to HPC to test workflow imports needed by docs

emu-project · May 17, 2022 · 3240a50 · 3240a50
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diff --git a/docs/_build/doctrees/environment.pickle b/docs/_build/doctrees/environment.pickle
diff --git a/docs/_build/doctrees/func_processing.doctree b/docs/_build/doctrees/func_processing.doctree
diff --git a/docs/_build/doctrees/func_processing.resources.afni.doctree b/docs/_build/doctrees/func_processing.resources.afni.doctree
diff --git a/docs/_build/doctrees/func_processing.resources.ashs.doctree b/docs/_build/doctrees/func_processing.resources.ashs.doctree
diff --git a/docs/_build/doctrees/func_processing.resources.doctree b/docs/_build/doctrees/func_processing.resources.doctree
diff --git a/docs/_build/doctrees/func_processing.resources.fmriprep.doctree b/docs/_build/doctrees/func_processing.resources.fmriprep.doctree
diff --git a/docs/_build/doctrees/func_processing.resources.reports.doctree b/docs/_build/doctrees/func_processing.resources.reports.doctree
diff --git a/docs/_build/doctrees/func_processing.workflow.doctree b/docs/_build/doctrees/func_processing.workflow.doctree
diff --git a/docs/_build/doctrees/index.doctree b/docs/_build/doctrees/index.doctree
diff --git a/docs/_build/doctrees/modules.doctree b/docs/_build/doctrees/modules.doctree
diff --git a/docs/_build/doctrees/resources.afni.doctree b/docs/_build/doctrees/resources.afni.doctree
diff --git a/docs/_build/doctrees/resources.ashs.doctree b/docs/_build/doctrees/resources.ashs.doctree
diff --git a/docs/_build/doctrees/resources.doctree b/docs/_build/doctrees/resources.doctree
diff --git a/docs/_build/doctrees/resources.fmriprep.doctree b/docs/_build/doctrees/resources.fmriprep.doctree
diff --git a/docs/_build/doctrees/resources.reports.doctree b/docs/_build/doctrees/resources.reports.doctree
diff --git a/docs/_build/doctrees/workflow.doctree b/docs/_build/doctrees/workflow.doctree
diff --git a/docs/_build/html/.buildinfo b/docs/_build/html/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: f9ae069b753a0cb0f4029da6874faed6
+config: a4df39dc9917fefea032fc7212f5a7be
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/docs/_build/html/_sources/func_processing.resources.afni.rst.txt b/docs/_build/html/_sources/func_processing.resources.afni.rst.txt
@@ -0,0 +1,69 @@
+func\_processing.resources.afni package
+=======================================
+
+Submodules
+----------
+
+func\_processing.resources.afni.copy module
+-------------------------------------------
+
+.. automodule:: func_processing.resources.afni.copy
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+func\_processing.resources.afni.deconvolve module
+-------------------------------------------------
+
+.. automodule:: func_processing.resources.afni.deconvolve
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+func\_processing.resources.afni.group module
+--------------------------------------------
+
+.. automodule:: func_processing.resources.afni.group
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+func\_processing.resources.afni.masks module
+--------------------------------------------
+
+.. automodule:: func_processing.resources.afni.masks
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+func\_processing.resources.afni.motion module
+---------------------------------------------
+
+.. automodule:: func_processing.resources.afni.motion
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+func\_processing.resources.afni.process module
+----------------------------------------------
+
+.. automodule:: func_processing.resources.afni.process
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+func\_processing.resources.afni.submit module
+---------------------------------------------
+
+.. automodule:: func_processing.resources.afni.submit
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+Module contents
+---------------
+
+.. automodule:: func_processing.resources.afni
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/docs/_build/html/_sources/func_processing.resources.ashs.rst.txt b/docs/_build/html/_sources/func_processing.resources.ashs.rst.txt
@@ -0,0 +1,21 @@
+func\_processing.resources.ashs package
+=======================================
+
+Submodules
+----------
+
+func\_processing.resources.ashs.hipseg module
+---------------------------------------------
+
+.. automodule:: func_processing.resources.ashs.hipseg
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+Module contents
+---------------
+
+.. automodule:: func_processing.resources.ashs
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/docs/_build/html/_sources/func_processing.resources.fmriprep.rst.txt b/docs/_build/html/_sources/func_processing.resources.fmriprep.rst.txt
@@ -0,0 +1,21 @@
+func\_processing.resources.fmriprep package
+===========================================
+
+Submodules
+----------
+
+func\_processing.resources.fmriprep.preprocess module
+-----------------------------------------------------
+
+.. automodule:: func_processing.resources.fmriprep.preprocess
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+Module contents
+---------------
+
+.. automodule:: func_processing.resources.fmriprep
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/docs/_build/html/_sources/func_processing.resources.reports.rst.txt b/docs/_build/html/_sources/func_processing.resources.reports.rst.txt
@@ -0,0 +1,21 @@
+func\_processing.resources.reports package
+==========================================
+
+Submodules
+----------
+
+func\_processing.resources.reports.check\_complete module
+---------------------------------------------------------
+
+.. automodule:: func_processing.resources.reports.check_complete
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+Module contents
+---------------
+
+.. automodule:: func_processing.resources.reports
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/docs/_build/html/_sources/func_processing.resources.rst.txt b/docs/_build/html/_sources/func_processing.resources.rst.txt
@@ -0,0 +1,21 @@
+func\_processing.resources package
+==================================
+
+Subpackages
+-----------
+
+.. toctree::
+   :maxdepth: 4
+
+   func_processing.resources.afni
+   func_processing.resources.ashs
+   func_processing.resources.fmriprep
+   func_processing.resources.reports
+
+Module contents
+---------------
+
+.. automodule:: func_processing.resources
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/docs/resources.rst → ...ild/html/_sources/func_processing.rst.txt b/docs/resources.rst → ...ild/html/_sources/func_processing.rst.txt
@@ -1,21 +1,19 @@
-resources package
-=================
+func\_processing package
+========================
 
 Subpackages
 -----------
 
 .. toctree::
    :maxdepth: 4
 
-   resources.afni
-   resources.ashs
-   resources.fmriprep
-   resources.reports
+   func_processing.resources
+   func_processing.workflow
 
 Module contents
 ---------------
 
-.. automodule:: resources
+.. automodule:: func_processing
    :members:
    :undoc-members:
    :show-inheritance:
diff --git a/docs/_build/html/_sources/func_processing.workflow.rst.txt b/docs/_build/html/_sources/func_processing.workflow.rst.txt
@@ -0,0 +1,45 @@
+func\_processing.workflow package
+=================================
+
+Submodules
+----------
+
+func\_processing.workflow.control\_afni module
+----------------------------------------------
+
+.. automodule:: func_processing.workflow.control_afni
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+func\_processing.workflow.control\_ashs module
+----------------------------------------------
+
+.. automodule:: func_processing.workflow.control_ashs
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+func\_processing.workflow.control\_fmriprep module
+--------------------------------------------------
+
+.. automodule:: func_processing.workflow.control_fmriprep
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+func\_processing.workflow.control\_reface module
+------------------------------------------------
+
+.. automodule:: func_processing.workflow.control_reface
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+Module contents
+---------------
+
+.. automodule:: func_processing.workflow
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/docs/_build/html/_sources/index.rst.txt b/docs/_build/html/_sources/index.rst.txt
@@ -1,18 +1,17 @@
-.. emu-func-processing documentation master file, created by
-   sphinx-quickstart on Fri Mar 25 15:40:39 2022.
+.. func_processing documentation master file, created by
+   sphinx-quickstart on Tue May 17 16:53:05 2022.
    You can adapt this file completely to your liking, but it should at least
    contain the root `toctree` directive.
 
-Welcome to emu-func-processing's documentation!
-===============================================
+Welcome to func_processing's documentation!
+===========================================
 
 .. toctree::
-   :maxdepth: 2
+   :maxdepth: 3
    :caption: Package Contents:
 
    modules
-   workflow
-   resources
+   func_processing
 
 
 Indices and tables

diff --git a/docs/_build/html/_sources/modules.rst.txt b/docs/_build/html/_sources/modules.rst.txt
@@ -4,6 +4,5 @@ func_processing
 .. toctree::
    :maxdepth: 4
 
-   resources
+   func_processing
    setup
-   workflow
diff --git a/docs/_build/html/_sources/resources.afni.rst.txt b/docs/_build/html/_sources/resources.afni.rst.txt
diff --git a/docs/_build/html/_sources/resources.ashs.rst.txt b/docs/_build/html/_sources/resources.ashs.rst.txt
diff --git a/docs/_build/html/_sources/resources.fmriprep.rst.txt b/docs/_build/html/_sources/resources.fmriprep.rst.txt