update docs structure

.github/workflows/doc.yml

@@ -33,16 +33,16 @@ jobs:
         pip install Markdown==3.4.3 rdflib==6.3.2  # Add any other dependencies if needed
 
     - name: Render documentation from ttl
-      run: python sphinx/ttl_to_rst.py
+      run: python docs/ttl_to_rst.py
 
     - name: Build HTML
       uses: ammaraskar/sphinx-action@master
       with:
-        docs-folder: "sphinx/"
+        docs-folder: "docs/"
         pre-build-command: "apt-get update -y; apt-get install -y pandoc"
 
     - name: Create context file from ttl
-      run: python sphinx/ttl_to_context.py
+      run: python docs/ttl_to_context.py
 
     - name: Check if HTML context directory exists
       run: |
@@ -61,7 +61,7 @@ jobs:
         fi
 
     - name: Copy context file to HTML directory
-      run: sudo cp context/context.json sphinx/_build/html/context/
+      run: sudo cp context/context.json docs/_build/html/context/
 
     - name: Commit changes
       run: |
@@ -104,13 +104,13 @@ jobs:
       uses: actions/upload-artifact@v4
       with:
         name: documentationHTML
-        path: sphinx/_build/html/
+        path: docs/_build/html/
 
     - name: Deploy
       uses: peaceiris/actions-gh-pages@v3
       if: github.ref == 'refs/heads/master'
       with:
         github_token: ${{ secrets.GITHUB_TOKEN }}
-        publish_dir: sphinx/_build/html
+        publish_dir: docs/_build/html
 
 

battery.ttl

@@ -14,7 +14,7 @@
 <https://w3id.org/emmo/domain/battery/battery> rdf:type owl:Ontology ;
                                                 owl:versionIRI <https://w3id.org/emmo/domain/battery/0.9.0-beta/battery> ;
                                                 owl:imports <https://w3id.org/emmo/domain/battery/0.9.0-beta/batteryquantities> ,
-                                                            <https://w3id.org/emmo/domain/electrochemistry/0.11.0-beta/electrochemistry> ;
+                                                            <https://w3id.org/emmo/domain/electrochemistry/0.12.1-beta/electrochemistry> ;
                                                 dcterms:abstract "The Battery Domain Ontology, a specialized domain within the Elementary Multiperspective Materials Ontology (EMMO), encompasses essential terms and relationships for battery components, cells, interfaces, methods, models, and data. Its primary objective is to enable the creation of linked and FAIR (Findable, Accessible, Interoperable, and Reusable) data, thereby fostering advancements in research and innovation within the realm of batteries. This ontology serves as a foundational resource for harmonizing battery knowledge representation, enhancing data interoperability, and accelerating progress in battery research and development." ;
                                                 dcterms:contributor "Casper Welzel Andersen" ,
                                                                     "Francesca Lonstad Bleken" ,

batteryquantities.ttl

@@ -13,7 +13,7 @@
 
 <https://w3id.org/emmo/domain/battery/batteryquantities> rdf:type owl:Ontology ;
                                               owl:versionIRI <https://w3id.org/emmo/domain/battery/0.9.0-beta/batteryquantities> ;
-                                              owl:imports <https://w3id.org/emmo/domain/electrochemistry/0.11.0-beta/electrochemicalquantities> ;
+                                              owl:imports <https://w3id.org/emmo/domain/electrochemistry/0.12.1-beta/electrochemicalquantities> ;
                                               dcterms:abstract "This battery quantities ontology is a domain of the Elementary Multiperspective Materials Ontology (EMMO). It is a specialized framework designed to represent and organize knowledge about battery quantities. It is designed to integrate with the battery domain ontology or other ontologies from the EMMO ecosystem. The main focus of this ontology is to provide machine-readable descriptions of common battery quantities, linking both to the larger descriptions of physical quantities in EMMO as well as other sources of information like the IEC, QUDT, Wikidata, etc. It should be used to support linked data generation in the battery domain."@en ;
                                               dcterms:contributor "Casper Welzel Andersen" ,
                                                                   "Francesca Lonstad Bleken" ,

catalog-v001.xml

@@ -1,7 +1,7 @@
 <?xml version="1.0" encoding="UTF-8" standalone="no"?>
 <catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
-    <uri id="Imports Wizard Entry" name="https://w3id.org/emmo/domain/electrochemistry/0.11.0-beta/electrochemistry" uri="https://raw.githubusercontent.com/emmo-repo/domain-electrochemistry/master/electrochemistry.ttl"/>
-    <uri id="Imports Wizard Entry" name="https://w3id.org/emmo/domain/electrochemistry/0.11.0-beta/electrochemicalquantities" uri="https://raw.githubusercontent.com/emmo-repo/domain-electrochemistry/master/electrochemicalquantities.ttl"/>
+    <uri id="Imports Wizard Entry" name="https://w3id.org/emmo/domain/electrochemistry/0.12.1-beta/electrochemistry" uri="https://raw.githubusercontent.com/emmo-repo/domain-electrochemistry/0.12.1-beta/electrochemistry.ttl"/>
+    <uri id="Imports Wizard Entry" name="https://w3id.org/emmo/domain/electrochemistry/0.12.1-beta/electrochemicalquantities" uri="https://raw.githubusercontent.com/emmo-repo/domain-electrochemistry/0.12.1-beta/electrochemicalquantities.ttl"/>
     <uri id="Imports Wizard Entry" name="https://w3id.org/emmo/1.0.0-beta7" uri="https://raw.githubusercontent.com/emmo-repo/EMMO/1.0.0-beta7/emmo.ttl"/>
     <group id="Folder Repository, directory=, recursive=true, Auto-Update=false, version=2" prefer="public" xml:base="">
         <uri name="https://w3id.org/emmo/domain/battery/0.9.0-beta/battery"    				uri="./battery.ttl"/>