Handle owlready2:python_names in genated triples in excelparser

[francescalb]

Description

EMMOntoPy tests fail with owlready0.45 and higher.
I want to fix one owlready release at a time, since there seem to be different things that are
incompatible going up to v0.48.

In v 0.45 owlready2 introduced the python names defined with the predicate "http://www.lesfleursdunormal.fr/static/_downloads/owlready_ontology.owl#python_name"
in the ontology. These should not be part of the generated ontology and have therefore been removed
in the ontology generated with the excelparser.

Previously I had problems with this predicate also being used in the saved ontologies, but this seems not to be the case anymore.

Type of change

• Bug fix.
• New feature.
• Documentation update.
• Test update.

Checklist

This checklist can be used as a help for the reviewer.

• Is the code easy to read and understand?
• Are comments for humans to read, not computers to disregard?
• Does a new feature has an accompanying new test (in the CI or unit testing schemes)?
• Has the documentation been updated as necessary?
• Does this close the issue?
• Is the change limited to the issue?
• Are errors handled for all outcomes?
• Does the new feature provide new restrictions on dependencies, and if so is this documented?

Comments

[codecov]

Codecov Report

Attention: Patch coverage is 80.00000% with 1 line in your changes missing coverage. Please review.

Project coverage is 72.61%. Comparing base (0f6c235) to head (e56b773).
Report is 1 commits behind head on master.

Files with missing lines	Patch %	Lines
ontopy/excelparser.py	80.00%	1 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##           master     #795      +/-   ##
==========================================
+ Coverage   72.54%   72.61%   +0.06%     
==========================================
  Files          18       18              
  Lines        3701     3706       +5     
==========================================
+ Hits         2685     2691       +6     
+ Misses       1016     1015       -1     

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[jesper-friis]

If create_ontology_from_pandas() is called with an input_ontology, then this will modify the input ontology. I suggest that you on line 314 replaces onto = input_ontology with onto = input_ontology.copy()` to ensure that we are not modifying the input ontology.

[francescalb]

Hmmm, in that case we should not remove the triples with python_name coming from the input_ontology...

[jesper-friis]

See the comment. Otherwise, looks fine.