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Removed COLUMN and DATA_ITEMS. Also renamed TABLE and ROW to LOOP and PACKET, respectively. #30

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Apr 27, 2021
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Removed COLUMN and DATA_ITEMS. Also renamed TABLE and ROW to LOOP and PACKET, respectively. #30

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97 changes: 41 additions & 56 deletions ontology/cif_top.ttl
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Original file line number Diff line number Diff line change
Expand Up @@ -183,7 +183,7 @@ skos:prefLabel rdf:type owl:AnnotationProperty ;
rdfs:subClassOf :DDL_CONCEPT ;
rdfs:comment """A superclass of CIF categories used to categorize data items.

Only data items belonging to the same category can be placed in the same table."""@en ;
Only data items belonging to the same category can be placed in the same loop."""@en ;
skos:altLabel "CIF_CATEGORIZED"@en ;
skos:prefLabel "CATEGORY"@en .

Expand All @@ -210,22 +210,12 @@ Only data items belonging to the same category can be placed in the same table."
rdfs:subClassOf :CIF ,
[ rdf:type owl:Restriction ;
owl:onProperty :hasSpatialDirectPart ;
owl:someValuesFrom :TABLE
owl:someValuesFrom :LOOP
] ;
rdfs:comment "A class representing a data block in a CIF file."@en ;
skos:prefLabel "CIF_DATA_BLOCK"@en .


### http://emmo.info/domain-crystallography/cif_top#COLUMN
:COLUMN rdf:type owl:Class ;
rdfs:subClassOf :DATA_ITEMS ,
[ rdf:type owl:Restriction ;
owl:onProperty :hasSpatialDirectPart ;
owl:someValuesFrom :DATA_VALUE
] ;
skos:prefLabel "COLUMN"@en .


### http://emmo.info/domain-crystallography/cif_top#Code
:Code rdf:type owl:Class ;
rdfs:subClassOf :Single ,
Expand Down Expand Up @@ -255,13 +245,6 @@ Only data items belonging to the same category can be placed in the same table."
skos:prefLabel "Complex"@en .


### http://emmo.info/domain-crystallography/cif_top#DATA_ITEMS
:DATA_ITEMS rdf:type owl:Class ;
rdfs:subClassOf :DDL_CONCEPT ;
rdfs:comment "A row, column or function in a table."@en ;
skos:prefLabel "DATA_ITEMS"@en .


### http://emmo.info/domain-crystallography/cif_top#DATA_VALUE
:DATA_VALUE rdf:type owl:Class ;
rdfs:subClassOf :DDL_CONCEPT ;
Expand Down Expand Up @@ -332,6 +315,36 @@ The text string itself consists of zero or more non-negative integers separated
skos:prefLabel "Integer"@en .


### http://emmo.info/domain-crystallography/cif_top#LOOP
:LOOP rdf:type owl:Class ;
rdfs:subClassOf :DDL_CONCEPT ,
[ rdf:type owl:Restriction ;
owl:onProperty :hasSpatialDirectPart ;
owl:someValuesFrom :PACKET
] ;
:example """Syntactically a table instance in a CIF file may be written as

loop_
_space_group_symop_id
_space_group_symop_operation_xyz
1 x,y,z
2 -x,-y,-z
3 -x,1/2+y,1/2-z
4 x,1/2-y,1/2+z

but the actual TABLE individual is just the data rows:

1 x,y,z
2 -x,-y,-z
3 -x,1/2+y,1/2-z
4 x,1/2-y,1/2+z"""@en ;
rdfs:comment """A loop can be understood as a table in a relational database.

Loops has packets as spatial direct parts."""@en ,
"The syntax of individual tables starts with the 'loop_' keyword followed by the name of the data items and then the actual data."@en ;
skos:prefLabel "LOOP"@en .


### http://emmo.info/domain-crystallography/cif_top#List
:List rdf:type owl:Class ;
rdfs:subClassOf :DATA_VALUE ,
Expand Down Expand Up @@ -361,15 +374,15 @@ The text string itself consists of zero or more non-negative integers separated
skos:prefLabel "Name"@en .


### http://emmo.info/domain-crystallography/cif_top#ROW
:ROW rdf:type owl:Class ;
rdfs:subClassOf :DATA_ITEMS ,
[ rdf:type owl:Restriction ;
owl:onProperty :hasSpatialDirectPart ;
owl:someValuesFrom :DATA_VALUE
] ;
rdfs:comment "Represents a single row in a table with data items as direct parts."@en ;
skos:prefLabel "ROW"@en .
### http://emmo.info/domain-crystallography/cif_top#PACKET
:PACKET rdf:type owl:Class ;
rdfs:subClassOf :DDL_CONCEPT ,
[ rdf:type owl:Restriction ;
owl:onProperty :hasSpatialDirectPart ;
owl:someValuesFrom :DATA_VALUE
] ;
rdfs:comment "A packet can be understood as a row in a relational database. A packet has data items as direct parts."@en ;
skos:prefLabel "PACKET"@en .


### http://emmo.info/domain-crystallography/cif_top#Range
Expand Down Expand Up @@ -410,34 +423,6 @@ The text string itself consists of zero or more non-negative integers separated
skos:prefLabel "Symop"@en .


### http://emmo.info/domain-crystallography/cif_top#TABLE
:TABLE rdf:type owl:Class ;
rdfs:subClassOf :DDL_CONCEPT ,
[ rdf:type owl:Restriction ;
owl:onProperty :hasSpatialDirectPart ;
owl:someValuesFrom :ROW
] ;
:example """Syntactically a table instance in a CIF file may be written as

loop_
_space_group_symop_id
_space_group_symop_operation_xyz
1 x,y,z
2 -x,-y,-z
3 -x,1/2+y,1/2-z
4 x,1/2-y,1/2+z

but the actual TABLE individual is just the data rows:

1 x,y,z
2 -x,-y,-z
3 -x,1/2+y,1/2-z
4 x,1/2-y,1/2+z"""@en ;
rdfs:comment "Represent a table with rows as spatial direct parts."@en ,
"The syntax of individual tables starts with the 'loop_' keyword followed by the name of the data items and then the actual data."@en ;
skos:prefLabel "TABLE"@en .


### http://emmo.info/domain-crystallography/cif_top#Table
:Table rdf:type owl:Class ;
rdfs:subClassOf :DATA_VALUE ,
Expand Down