galaxy-tool-export-cbioportal-image

Overview

galaxy-tool-export-cbioportal-image is a Python-based tool designed to export data from Galaxy tools to cBioPortal images. This project aims to facilitate the integration and visualization of genomic data.

Features

• Export data from Galaxy tools
• Generate cBioPortal-compatible images
• Easy integration with existing workflows
• Can be wrapped in a Galaxy server as a tool using the provided XML

Installation

To install the necessary dependencies, run:

pip install -r requirements.txt

Usage

To use the tool, execute the following command:

python export_cbioportal_image.py --input <input_file> --output <output_file>

Arguments

• --input: Path to the input file
• --output: Path to the output file

Galaxy Integration

This tool can be integrated into a Galaxy server using the provided XML file export_cbioportal_image.xml. The XML file defines the tool's interface and parameters for use within the Galaxy platform.