Chickens

This repository contains R code for the spatial kriging model used to make Figure 2 from The biocultural origins and dispersal of domestic chickens.

If you reuse any of this code then please cite the paper:

Peters, J., Lebrasseur, O., Irving-Pease, E.K., Paxinos, P.D., Best, J., Smallman, R., Callou, C., Gardeisen, A., Trixl, S., Frantz, L., Sykes, N., Fuller, D.Q., Larson, G., 2022. The biocultural origins and dispersal of domestic chickens. Proceedings of the National Academy of Sciences 119, e2121978119. https://doi.org/10.1073/pnas.2121978119

Installation

Download the code:

git clone [email protected]:ekirving/chickens.git && cd chickens/

To reproduce the figure from the paper you will need to install the software dependencies.

The easiest way to do this is with the conda package manager.

conda env create --name chickens --file environment.yaml

Then activate the environment:

conda activate chickens

Running the code

To reproduce Figure 2, run:

Rscript kriging-plot.R 

Author

Evan K. Irving-Pease, GLOBE Institute, University of Copenhagen

License

This project is licensed under the MIT License - see the LICENSE file for details