Merge pull request #12 from eco4cast/targets-docker

Creating dockerfile for targets
eco4cast · Dec 20, 2023 · 73dac9b · 73dac9b
2 parents 83d6aca + 6581264
commit 73dac9b
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Showing 4 changed files with 25 additions and 37 deletions.
diff --git a/.github/workflows/docker.yaml → .github/workflows/docker_targets.yaml b/.github/workflows/docker.yaml → .github/workflows/docker_targets.yaml
@@ -1,4 +1,4 @@
-name: build docker container
+name: build targets docker container
 
 on:
   workflow_dispatch:
@@ -24,5 +24,6 @@ jobs:
         uses: docker/build-push-action@v3
         with:
           push: true
-          tags: eco4cast/rocker-neon4cast:latest
+          tags: eco4cast/usgsrc4cast-targets:latest
           build-args: GITHUB_PAT=${{ secrets.PAT }}
+          file: targets/Dockerfile
diff --git a/.github/workflows/targets.yaml b/.github/workflows/targets.yaml
@@ -16,14 +16,13 @@ jobs:
       AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY_SUBMISSIONS }}
       OSN_KEY: ${{ secrets.OSN_KEY }}
       OSN_SECRET: ${{ secrets.OSN_SECRET }}
-    container: rocker/geospatial:latest
+    container: eco4cast/usgsrc4cast-targets:latest
     steps:
       - uses: actions/checkout@v3
 
       - name: Generate targets
         shell: Rscript {0}
         run: |
-          install.packages(c("clustermq", "dataRetrieval", "RCurl", "tarchetypes", "targets"))
           setwd("targets")
           targets::tar_make()
 
diff --git a/Dockerfile b/Dockerfile
diff --git a/targets/Dockerfile b/targets/Dockerfile
@@ -0,0 +1,21 @@
+FROM eco4cast/rocker-neon4cast:latest
+
+# Import GitHub Secret
+ARG GITHUB_PAT
+ENV GITHUB_PAT=$GITHUB_PAT
+
+# Declares build arguments
+# ARG NB_USER
+# ARG NB_UID
+
+# COPY --chown=${NB_USER} . ${HOME}
+
+#USER ${NB_USER}
+RUN install2.r --error \
+  clustermq \
+  dataRetrieval \
+  tarchetypes \
+  targets \
+  && rm -rf /tmp/downloaded_packages /tmp/*.rds /tmp/Rtmp*
+
+COPY cron.sh /etc/services.d/cron/run