Merge branch 'main' of https://github.com/eco4cast/neon4cast-ci

# Conflicts: # catalog/forecasts/Terrestrial/30min_latent_heat_flux/collection.json # catalog/forecasts/Terrestrial/Daily_Net_ecosystem_exchange/collection.json # catalog/forecasts/collection.json # catalog/forecasts/models/collection.json # catalog/forecasts/models/model_items/persistenceRW.json # catalog/forecasts/models/model_items/tg_arima.json # catalog/forecasts/models/model_items/tg_bag_mlp.json # catalog/forecasts/models/model_items/tg_ets.json # catalog/forecasts/models/model_items/tg_humidity_lm.json # catalog/forecasts/models/model_items/tg_humidity_lm_all_sites.json # catalog/forecasts/models/model_items/tg_lasso.json # catalog/forecasts/models/model_items/tg_precip_lm.json # catalog/forecasts/models/model_items/tg_precip_lm_all_sites.json # catalog/forecasts/models/model_items/tg_randfor.json # catalog/forecasts/models/model_items/tg_tbats.json
eco4cast · Jan 2, 2024 · d45212c · d45212c
2 parents e685d23 + 0297e76
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diff --git a/catalog/forecasts/Aquatics/Daily_Chlorophyll_a/collection.json b/catalog/forecasts/Aquatics/Daily_Chlorophyll_a/collection.json
@@ -183,7 +183,7 @@
       "interval": [
         [
           "2023-01-01T00:00:00Z",
-          "2024-01-24T00:00:00Z"
+          "2024-02-05T00:00:00Z"
         ]
       ]
     }

diff --git a/catalog/forecasts/Aquatics/Daily_Dissolved_oxygen/collection.json b/catalog/forecasts/Aquatics/Daily_Dissolved_oxygen/collection.json
@@ -120,6 +120,11 @@
       "type": "application/json",
       "href": "../../models/model_items/tg_bag_mlp.json"
     },
+    {
+      "rel": "item",
+      "type": "application/json",
+      "href": "../../models/model_items/neon4cast_example.json"
+    },
     {
       "rel": "parent",
       "type": "application/json",
@@ -163,7 +168,7 @@
       "interval": [
         [
           "2023-01-01T00:00:00Z",
-          "2024-11-13T00:00:00Z"
+          "2024-11-25T00:00:00Z"
         ]
       ]
     }

diff --git a/catalog/forecasts/Aquatics/Daily_Water_temperature/collection.json b/catalog/forecasts/Aquatics/Daily_Water_temperature/collection.json
@@ -190,6 +190,16 @@
       "type": "application/json",
       "href": "../../models/model_items/tg_auto_adam.json"
     },
+    {
+      "rel": "item",
+      "type": "application/json",
+      "href": "../../models/model_items/precip_mod.json"
+    },
+    {
+      "rel": "item",
+      "type": "application/json",
+      "href": "../../models/model_items/neon4cast_example.json"
+    },
     {
       "rel": "parent",
       "type": "application/json",
@@ -233,7 +243,7 @@
       "interval": [
         [
           "2023-01-01T00:00:00Z",
-          "2024-11-13T00:00:00Z"
+          "2024-11-25T00:00:00Z"
         ]
       ]
     }

diff --git a/catalog/forecasts/Aquatics/collection.json b/catalog/forecasts/Aquatics/collection.json
@@ -68,7 +68,7 @@
       "interval": [
         [
           "2023-01-01T00:00:00Z",
-          "2024-12-09T00:00:00Z"
+          "2024-12-23T00:00:00Z"
         ]
       ]
     }

diff --git a/catalog/forecasts/Beetles/Weekly_beetle_community_abundance/collection.json b/catalog/forecasts/Beetles/Weekly_beetle_community_abundance/collection.json
@@ -128,7 +128,7 @@
       "interval": [
         [
           "2023-01-02T00:00:00Z",
-          "2024-12-09T00:00:00Z"
+          "2024-12-23T00:00:00Z"
         ]
       ]
     }

diff --git a/catalog/forecasts/Beetles/Weekly_beetle_community_richness/collection.json b/catalog/forecasts/Beetles/Weekly_beetle_community_richness/collection.json
@@ -128,7 +128,7 @@
       "interval": [
         [
           "2023-01-02T00:00:00Z",
-          "2024-12-09T00:00:00Z"
+          "2024-12-23T00:00:00Z"
         ]
       ]
     }

diff --git a/catalog/forecasts/Beetles/collection.json b/catalog/forecasts/Beetles/collection.json
@@ -63,7 +63,7 @@
       "interval": [
         [
           "2023-01-01T00:00:00Z",
-          "2024-12-09T00:00:00Z"
+          "2024-12-23T00:00:00Z"
         ]
       ]
     }

diff --git a/catalog/forecasts/Phenology/Daily_Green_chromatic_coordinate/collection.json b/catalog/forecasts/Phenology/Daily_Green_chromatic_coordinate/collection.json
@@ -13,62 +13,62 @@
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/cb_prophet.json"
+      "href": "../../models/model_items/tg_bag_mlp.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/climatology.json"
+      "href": "../../models/model_items/tg_ets.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/persistenceRW.json"
+      "href": "../../models/model_items/tg_humidity_lm.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/tg_arima.json"
+      "href": "../../models/model_items/tg_humidity_lm_all_sites.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/tg_auto_adam.json"
+      "href": "../../models/model_items/tg_lasso.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/tg_bag_mlp.json"
+      "href": "../../models/model_items/tg_lasso_all_sites.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/tg_ets.json"
+      "href": "../../models/model_items/tg_precip_lm.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/tg_humidity_lm.json"
+      "href": "../../models/model_items/persistenceRW.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/tg_humidity_lm_all_sites.json"
+      "href": "../../models/model_items/tg_arima.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/tg_lasso.json"
+      "href": "../../models/model_items/tg_auto_adam.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/tg_lasso_all_sites.json"
+      "href": "../../models/model_items/cb_prophet.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/tg_precip_lm.json"
+      "href": "../../models/model_items/climatology.json"
     },
     {
       "rel": "item",
@@ -95,6 +95,11 @@
       "type": "application/json",
       "href": "../../models/model_items/tg_randfor.json"
     },
+    {
+      "rel": "item",
+      "type": "application/json",
+      "href": "../../models/model_items/PEG.json"
+    },
     {
       "rel": "parent",
       "type": "application/json",
@@ -138,7 +143,7 @@
       "interval": [
         [
           "2023-01-01T00:00:00Z",
-          "2024-01-24T00:00:00Z"
+          "2024-02-05T00:00:00Z"
         ]
       ]
     }

diff --git a/catalog/forecasts/Phenology/Daily_Red_chromatic_coordinate/collection.json b/catalog/forecasts/Phenology/Daily_Red_chromatic_coordinate/collection.json
@@ -110,6 +110,11 @@
       "type": "application/json",
       "href": "../../models/model_items/tg_auto_adam.json"
     },
+    {
+      "rel": "item",
+      "type": "application/json",
+      "href": "../../models/model_items/PEG.json"
+    },
     {
       "rel": "parent",
       "type": "application/json",
@@ -153,7 +158,7 @@
       "interval": [
         [
           "2023-01-01T00:00:00Z",
-          "2024-01-24T00:00:00Z"
+          "2024-02-05T00:00:00Z"
         ]
       ]
     }

diff --git a/catalog/forecasts/Phenology/collection.json b/catalog/forecasts/Phenology/collection.json
@@ -63,7 +63,7 @@
       "interval": [
         [
           "2023-01-01T00:00:00Z",
-          "2024-12-09T00:00:00Z"
+          "2024-12-23T00:00:00Z"
         ]
       ]
     }

diff --git a/catalog/forecasts/Terrestrial/30min_latent_heat_flux/collection.json b/catalog/forecasts/Terrestrial/30min_latent_heat_flux/collection.json
@@ -0,0 +1,147 @@
+{
+  "id": "30min_latent_heat_flux",
+  "description": "This page includes all models for the 30min_latent_heat_flux variable.",
+  "stac_version": "1.0.0",
+  "license": "CC0-1.0",
+  "stac_extensions": [
+    "https://stac-extensions.github.io/scientific/v1.0.0/schema.json",
+    "https://stac-extensions.github.io/item-assets/v1.0.0/schema.json",
+    "https://stac-extensions.github.io/table/v1.2.0/schema.json"
+  ],
+  "type": "Collection",
+  "links": [
+    {
+      "rel": "item",
+      "type": "application/json",
+      "href": "../../models/model_items/climatology.json"
+    },
+    {
+      "rel": "parent",
+      "type": "application/json",
+      "href": "../collection.json"
+    },
+    {
+      "rel": "root",
+      "type": "application/json",
+      "href": "../collection.json"
+    },
+    {
+      "rel": "self",
+      "type": "application/json",
+      "href": "collection.json"
+    },
+    {
+      "rel": "cite-as",
+      "href": "https://doi.org/10.1002/fee.2616"
+    },
+    {
+      "rel": "about",
+      "href": "https://projects.ecoforecast.org/neon4cast-docs/",
+      "type": "text/html",
+      "title": "NEON Ecological Forecasting Challenge Documentation"
+    },
+    {
+      "rel": "describedby",
+      "href": "https://projects.ecoforecast.org/neon4cast-docs/",
+      "title": "NEON Forecast Challenge Dashboard",
+      "type": "text/html"
+    }
+  ],
+  "title": "30min_latent_heat_flux",
+  "extent": {
+    "spatial": {
+      "bbox": [
+        [-156.6194, 17.9696, -66.8687, 71.2824]
+      ]
+    },
+    "temporal": {
+      "interval": [
+        [
+          "2023-11-14T00:00:00Z",
+          "2024-01-09T00:00:00Z"
+        ]
+      ]
+    }
+  },
+  "table:columns": [
+    {
+      "name": "reference_datetime",
+      "type": "timestamp[us, tz=UTC]",
+      "description": "datetime that the forecast was initiated (horizon = 0)"
+    },
+    {
+      "name": "datetime",
+      "type": "timestamp[us, tz=UTC]",
+      "description": "datetime of the forecasted value (ISO 8601)"
+    },
+    {
+      "name": "site_id",
+      "type": "string",
+      "description": "For forecasts that are not on a spatial grid, use of a site dimension that maps to a more detailed geometry (points, polygons, etc.) is allowable. In general this would be documented in the external metadata (e.g., alook-up table that provides lon and lat)"
+    },
+    {
+      "name": "family",
+      "type": "string",
+      "description": "For ensembles: “ensemble.” Default value if unspecified for probability distributions: Name of the statistical distribution associated with the reported statistics. The “sample” distribution is synonymous with “ensemble.”For summary statistics: “summary.”"
+    },
+    {
+      "name": "parameter",
+      "type": "string",
+      "description": "ensemble member or distribution parameter"
+    },
+    {
+      "name": "prediction",
+      "type": "double",
+      "description": "predicted value for variable"
+    },
+    {
+      "name": "pub_datetime",
+      "type": "timestamp[us, tz=UTC]",
+      "description": "datetime that forecast was submitted"
+    },
+    {
+      "name": "project_id",
+      "type": "string",
+      "description": "unique identifier for the forecast project"
+    },
+    {
+      "name": "duration",
+      "type": "string",
+      "description": "temporal duration of forecast (hourly, daily, etc.); follows ISO 8601 duration convention"
+    },
+    {
+      "name": "variable",
+      "type": "string",
+      "description": "name of forecasted variable"
+    },
+    {
+      "name": "model_id",
+      "type": "string",
+      "description": "unique model identifier"
+    },
+    {
+      "name": "reference_date",
+      "type": "string",
+      "description": "date that the forecast was initiated"
+    }
+  ],
+  "assets": {
+    "data": {
+      "href": "\"s3://anonymous@bio230014-bucket01/challenges/forecasts/parquet/project_id=neon4cast/duration=PT30M/variable=le?endpoint_override=sdsc.osn.xsede.org\"",
+      "type": "application/x-parquet",
+      "title": "Database Access",
+      "roles": [
+        "data"
+      ],
+      "description": "Use `arrow` for remote access to the database. This R code will return results for forecasts of the variable by the specific model .\n\n### R\n\n```{r}\n# Use code below\n\nall_results <- arrow::open_dataset(\"s3://anonymous@bio230014-bucket01/challenges/forecasts/parquet/project_id=neon4cast/duration=PT30M/variable=le?endpoint_override=sdsc.osn.xsede.org\")\ndf <- all_results |> dplyr::collect()\n\n```\n       \n\nYou can use dplyr operations before calling `dplyr::collect()` to `summarise`, `select` columns, and/or `filter` rows prior to pulling the data into a local `data.frame`. Reducing the data that is pulled locally will speed up the data download speed and reduce your memory usage.\n\n\n"
+    },
+    "thumbnail": {
+      "href": "pending",
+      "type": "image/JPEG",
+      "roles": [
+        "thumbnail"
+      ],
+      "title": "pending"
+    }
+  }
+}