update catalog

eco4cast · Dec 22, 2023 · c5fcf24 · c5fcf24
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commit c5fcf24
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Showing 175 changed files with 1,924 additions and 575 deletions.
diff --git a/catalog/forecasts/Aquatics/Daily_Chlorophyll_a/collection.json b/catalog/forecasts/Aquatics/Daily_Chlorophyll_a/collection.json
@@ -183,7 +183,7 @@
       "interval": [
         [
           "2023-01-01T00:00:00Z",
-          "2024-01-24T00:00:00Z"
+          "2024-01-25T00:00:00Z"
         ]
       ]
     }

diff --git a/catalog/forecasts/Aquatics/Daily_Dissolved_oxygen/collection.json b/catalog/forecasts/Aquatics/Daily_Dissolved_oxygen/collection.json
@@ -120,6 +120,11 @@
       "type": "application/json",
       "href": "../../models/model_items/tg_bag_mlp.json"
     },
+    {
+      "rel": "item",
+      "type": "application/json",
+      "href": "../../models/model_items/neon4cast_example.json"
+    },
     {
       "rel": "parent",
       "type": "application/json",
@@ -163,7 +168,7 @@
       "interval": [
         [
           "2023-01-01T00:00:00Z",
-          "2024-11-13T00:00:00Z"
+          "2024-11-14T00:00:00Z"
         ]
       ]
     }

diff --git a/catalog/forecasts/Aquatics/Daily_Water_temperature/collection.json b/catalog/forecasts/Aquatics/Daily_Water_temperature/collection.json
@@ -190,6 +190,16 @@
       "type": "application/json",
       "href": "../../models/model_items/tg_auto_adam.json"
     },
+    {
+      "rel": "item",
+      "type": "application/json",
+      "href": "../../models/model_items/precip_mod.json"
+    },
+    {
+      "rel": "item",
+      "type": "application/json",
+      "href": "../../models/model_items/neon4cast_example.json"
+    },
     {
       "rel": "parent",
       "type": "application/json",
@@ -233,7 +243,7 @@
       "interval": [
         [
           "2023-01-01T00:00:00Z",
-          "2024-11-13T00:00:00Z"
+          "2024-11-14T00:00:00Z"
         ]
       ]
     }

diff --git a/catalog/forecasts/Phenology/Daily_Green_chromatic_coordinate/collection.json b/catalog/forecasts/Phenology/Daily_Green_chromatic_coordinate/collection.json
@@ -28,47 +28,47 @@
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/tg_arima.json"
+      "href": "../../models/model_items/tg_bag_mlp.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/tg_auto_adam.json"
+      "href": "../../models/model_items/tg_ets.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/tg_bag_mlp.json"
+      "href": "../../models/model_items/tg_humidity_lm.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/tg_ets.json"
+      "href": "../../models/model_items/tg_humidity_lm_all_sites.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/tg_humidity_lm.json"
+      "href": "../../models/model_items/tg_lasso.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/tg_humidity_lm_all_sites.json"
+      "href": "../../models/model_items/tg_lasso_all_sites.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/tg_lasso.json"
+      "href": "../../models/model_items/tg_precip_lm.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/tg_lasso_all_sites.json"
+      "href": "../../models/model_items/tg_arima.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/tg_precip_lm.json"
+      "href": "../../models/model_items/tg_auto_adam.json"
     },
     {
       "rel": "item",
@@ -95,6 +95,11 @@
       "type": "application/json",
       "href": "../../models/model_items/tg_randfor.json"
     },
+    {
+      "rel": "item",
+      "type": "application/json",
+      "href": "../../models/model_items/PEG.json"
+    },
     {
       "rel": "parent",
       "type": "application/json",
@@ -138,7 +143,7 @@
       "interval": [
         [
           "2023-01-01T00:00:00Z",
-          "2024-01-24T00:00:00Z"
+          "2024-01-25T00:00:00Z"
         ]
       ]
     }

diff --git a/catalog/forecasts/Phenology/Daily_Red_chromatic_coordinate/collection.json b/catalog/forecasts/Phenology/Daily_Red_chromatic_coordinate/collection.json
@@ -110,6 +110,11 @@
       "type": "application/json",
       "href": "../../models/model_items/tg_auto_adam.json"
     },
+    {
+      "rel": "item",
+      "type": "application/json",
+      "href": "../../models/model_items/PEG.json"
+    },
     {
       "rel": "parent",
       "type": "application/json",
@@ -153,7 +158,7 @@
       "interval": [
         [
           "2023-01-01T00:00:00Z",
-          "2024-01-24T00:00:00Z"
+          "2024-01-25T00:00:00Z"
         ]
       ]
     }

diff --git a/catalog/forecasts/Terrestrial/30min_latent_heat_flux/collection.json b/catalog/forecasts/Terrestrial/30min_latent_heat_flux/collection.json
@@ -58,7 +58,7 @@
       "interval": [
         [
           "2023-11-14T00:00:00Z",
-          "2023-12-30T00:00:00Z"
+          "2023-12-31T00:00:00Z"
         ]
       ]
     }

diff --git a/catalog/forecasts/Terrestrial/Daily_Net_ecosystem_exchange/collection.json b/catalog/forecasts/Terrestrial/Daily_Net_ecosystem_exchange/collection.json
@@ -133,7 +133,7 @@
       "interval": [
         [
           "2023-01-01T00:00:00Z",
-          "2024-01-25T00:00:00Z"
+          "2024-01-26T00:00:00Z"
         ]
       ]
     }

diff --git a/catalog/forecasts/collection.json b/catalog/forecasts/collection.json
@@ -169,7 +169,7 @@
       "roles": [
         "data"
       ],
-      "description": "Use `arrow` for remote access to the database. This R code will return results for the VERA Forecasting Challenge.\n\n### R\n\n```{r}\n# Use code below\n\nall_results <- arrow::open_dataset(\"s3://anonymous@bio230014-bucket01/challenges/forecasts/parquet/?endpoint_override=sdsc.osn.xsede.org\")\ndf <- all_results |> dplyr::collect()\n\n```\n       \n\nYou can use dplyr operations before calling `dplyr::collect()` to `summarise`, `select` columns, and/or `filter` rows prior to pulling the data into a local `data.frame`. Reducing the data that is pulled locally will speed up the data download speed and reduce your memory usage.\n\n\n"
+      "description": "Use `arrow` for remote access to the database. This R code will return results for the Forecasting Challenge.\n\n### R\n\n```{r}\n# Use code below\n\nall_results <- arrow::open_dataset(\"s3://anonymous@bio230014-bucket01/challenges/forecasts/parquet/?endpoint_override=sdsc.osn.xsede.org\")\ndf <- all_results |> dplyr::collect()\n\n```\n       \n\nYou can use dplyr operations before calling `dplyr::collect()` to `summarise`, `select` columns, and/or `filter` rows prior to pulling the data into a local `data.frame`. Reducing the data that is pulled locally will speed up the data download speed and reduce your memory usage.\n\n\n"
     },
     "thumbnail": {
       "href": "https://raw.githubusercontent.com/eco4cast/neon4cast-ci/main/catalog/thumbnail_plots/51629805865_0ef01ffbbc_c.jpg",

diff --git a/catalog/forecasts/models/collection.json b/catalog/forecasts/models/collection.json
@@ -123,12 +123,12 @@
     {
       "rel": "item",
       "type": "application/json",
-      "href": "model_items/tg_auto_adam.json"
+      "href": "model_items/tg_humidity_lm_all_sites.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "model_items/tg_humidity_lm_all_sites.json"
+      "href": "model_items/tg_auto_adam.json"
     },
     {
       "rel": "item",
@@ -168,32 +168,32 @@
     {
       "rel": "item",
       "type": "application/json",
-      "href": "model_items/mean.json"
+      "href": "model_items/GLEON_JRabaey_temp_physics.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "model_items/tg_randfor_all_sites.json"
+      "href": "model_items/GLEON_physics.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "model_items/GLEON_JRabaey_temp_physics.json"
+      "href": "model_items/baseline_ensemble.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "model_items/GLEON_physics.json"
+      "href": "model_items/fARIMA.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "model_items/baseline_ensemble.json"
+      "href": "model_items/mean.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "model_items/fARIMA.json"
+      "href": "model_items/tg_randfor_all_sites.json"
     },
     {
       "rel": "item",
@@ -260,6 +260,21 @@
       "type": "application/json",
       "href": "model_items/USUNEEDAILY.json"
     },
+    {
+      "rel": "item",
+      "type": "application/json",
+      "href": "model_items/precip_mod.json"
+    },
+    {
+      "rel": "item",
+      "type": "application/json",
+      "href": "model_items/neon4cast_example.json"
+    },
+    {
+      "rel": "item",
+      "type": "application/json",
+      "href": "model_items/PEG.json"
+    },
     {
       "rel": "parent",
       "type": "application/json",

diff --git a/catalog/forecasts/models/model_items/GLEON_JRabaey_temp_physics.json b/catalog/forecasts/models/model_items/GLEON_JRabaey_temp_physics.json
@@ -55,7 +55,7 @@
   "properties": {
     "description": "\nmodel info: NA\n\nSites: WLOU, ARIK, BARC, BIGC, BLDE, BLUE, BLWA, CARI, COMO, CRAM, CUPE, FLNT, GUIL, HOPB, KING, LECO, LEWI, LIRO, MART, MAYF, MCDI, MCRA, OKSR, POSE, PRIN, PRLA, PRPO, REDB, SUGG, SYCA, TECR, TOMB, TOOK, WALK\n\nVariables: Daily Water_temperature",
     "start_datetime": "2023-11-14",
-    "end_datetime": "2024-01-21",
+    "end_datetime": "2024-01-22",
     "providers": [
       {
         "url": "pending",

diff --git a/catalog/forecasts/models/model_items/GLEON_lm_lag_1day.json b/catalog/forecasts/models/model_items/GLEON_lm_lag_1day.json
@@ -28,7 +28,7 @@
   "properties": {
     "description": "\nmodel info: NA\n\nSites: BARC, CRAM, LIRO, PRLA, PRPO, SUGG, TOOK\n\nVariables: Daily Dissolved_oxygen, Daily Water_temperature",
     "start_datetime": "2023-11-14",
-    "end_datetime": "2024-01-22",
+    "end_datetime": "2024-01-23",
     "providers": [
       {
         "url": "pending",