fixing phenology

eco4cast · Nov 1, 2023 · 8d5c7c3 · 8d5c7c3
1 parent 99d7aa7
commit 8d5c7c3
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Showing 2 changed files with 19 additions and 8 deletions.
diff --git a/.github/workflows/targets.yaml b/.github/workflows/targets.yaml
@@ -9,7 +9,7 @@ on:
 name: target-generation
 
 jobs:
-  targets:
+  phenology:
     runs-on: ubuntu-latest
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
@@ -24,4 +24,21 @@ jobs:
       - name: Generate targets
         shell: Rscript {0}
         run: |
-          source("targets/generate_daily_targets.R")
+          source("targets/phenology_targets")
+
+  beetles:
+    runs-on: ubuntu-latest
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_SUBMISSIONS }}
+      AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY_SUBMISSIONS }}
+      OSN_KEY: ${{ secrets.OSN_KEY }}
+      OSN_SECRET: ${{ secrets.OSN_SECRET }}
+    container: rocker/geospatial:latest
+    steps:
+      - uses: actions/checkout@v3
+
+      - name: Generate targets
+        shell: Rscript {0}
+        run: |
+          source("targets/beetles_targets")
diff --git a/targets/phenology_targets.R b/targets/phenology_targets.R
@@ -64,12 +64,6 @@ allData2 <- allData2 |>
   select("time", "site_id", "variable", "observation") |>
   rename(datetime = time)
 
-readr::write_csv(allData2, "phenology-targets.csv.gz")
-
-aws.s3::put_object(file = "phenology-targets.csv.gz",
-                   object = "phenology/phenology-targets.csv.gz",
-                   bucket = "neon4cast-targets")
-
 s3 <- arrow::s3_bucket("neon4cast-targets/phenology",
                               endpoint_override = "data.ecoforecast.org",
                               access_key = Sys.getenv("AWS_ACCESS_KEY_SUBMISSIONS"),