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Merge branch 'main' of https://github.com/eco4cast/neon4cast-ci
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@rqthomas
rqthomas committed Nov 10, 2023
2 parents 5e5a0cf + 48d07a8 commit 724d7b6
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Showing 122 changed files with 16,310 additions and 188 deletions.
2 changes: 1 addition & 1 deletion catalog/forecasts/Aquatics/Daily Chlorophyll-a/collection.json
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Expand Up @@ -172,7 +172,7 @@
},
{
"rel": "describedby",
"href": "https://projects.ecoforecast.org/neon4cast-dashboard/",
"href": "https://projects.ecoforecast.org/neon4cast-docs/",
"title": "NEON Forecast Challenge Dashboard",
"type": "text/html"
}
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4 changes: 2 additions & 2 deletions catalog/forecasts/Aquatics/Daily Dissolved oxygen/collection.json
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Expand Up @@ -152,7 +152,7 @@
},
{
"rel": "describedby",
"href": "https://projects.ecoforecast.org/neon4cast-dashboard/",
"href": "https://projects.ecoforecast.org/neon4cast-docs/",
"title": "NEON Forecast Challenge Dashboard",
"type": "text/html"
}
Expand All @@ -168,7 +168,7 @@
"interval": [
[
"2023-03-01T00:00:00Z",
"2024-10-02T00:00:00Z"
"2024-10-03T00:00:00Z"
]
]
}
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4 changes: 2 additions & 2 deletions catalog/forecasts/Aquatics/Daily Water temperature/collection.json
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Expand Up @@ -222,7 +222,7 @@
},
{
"rel": "describedby",
"href": "https://projects.ecoforecast.org/neon4cast-dashboard/",
"href": "https://projects.ecoforecast.org/neon4cast-docs/",
"title": "NEON Forecast Challenge Dashboard",
"type": "text/html"
}
Expand All @@ -238,7 +238,7 @@
"interval": [
[
"2023-01-10T00:00:00Z",
"2024-10-02T00:00:00Z"
"2024-10-03T00:00:00Z"
]
]
}
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2 changes: 1 addition & 1 deletion catalog/forecasts/Aquatics/collection.json
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Expand Up @@ -52,7 +52,7 @@
},
{
"rel": "describedby",
"href": "https://projects.ecoforecast.org/neon4cast-dashboard/",
"href": "https://projects.ecoforecast.org/neon4cast-docs/",
"title": "NEON Forecast Challenge Dashboard",
"type": "text/html"
}
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2 changes: 1 addition & 1 deletion catalog/forecasts/Beetles/Weekly beetle community abundance/collection.json
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Expand Up @@ -102,7 +102,7 @@
},
{
"rel": "describedby",
"href": "https://projects.ecoforecast.org/neon4cast-dashboard/",
"href": "https://projects.ecoforecast.org/neon4cast-docs/",
"title": "NEON Forecast Challenge Dashboard",
"type": "text/html"
}
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2 changes: 1 addition & 1 deletion catalog/forecasts/Beetles/Weekly beetle community richness/collection.json
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Expand Up @@ -102,7 +102,7 @@
},
{
"rel": "describedby",
"href": "https://projects.ecoforecast.org/neon4cast-dashboard/",
"href": "https://projects.ecoforecast.org/neon4cast-docs/",
"title": "NEON Forecast Challenge Dashboard",
"type": "text/html"
}
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2 changes: 1 addition & 1 deletion catalog/forecasts/Beetles/collection.json
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Expand Up @@ -47,7 +47,7 @@
},
{
"rel": "describedby",
"href": "https://projects.ecoforecast.org/neon4cast-dashboard/",
"href": "https://projects.ecoforecast.org/neon4cast-docs/",
"title": "NEON Forecast Challenge Dashboard",
"type": "text/html"
}
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2 changes: 1 addition & 1 deletion catalog/forecasts/Phenology/Daily Green chromatic coordinate/collection.json
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Expand Up @@ -127,7 +127,7 @@
},
{
"rel": "describedby",
"href": "https://projects.ecoforecast.org/neon4cast-dashboard/",
"href": "https://projects.ecoforecast.org/neon4cast-docs/",
"title": "NEON Forecast Challenge Dashboard",
"type": "text/html"
}
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2 changes: 1 addition & 1 deletion catalog/forecasts/Phenology/Daily Red chromatic coordinate/collection.json
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Expand Up @@ -142,7 +142,7 @@
},
{
"rel": "describedby",
"href": "https://projects.ecoforecast.org/neon4cast-dashboard/",
"href": "https://projects.ecoforecast.org/neon4cast-docs/",
"title": "NEON Forecast Challenge Dashboard",
"type": "text/html"
}
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2 changes: 1 addition & 1 deletion catalog/forecasts/Phenology/collection.json
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Expand Up @@ -47,7 +47,7 @@
},
{
"rel": "describedby",
"href": "https://projects.ecoforecast.org/neon4cast-dashboard/",
"href": "https://projects.ecoforecast.org/neon4cast-docs/",
"title": "NEON Forecast Challenge Dashboard",
"type": "text/html"
}
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2 changes: 1 addition & 1 deletion catalog/forecasts/Terrestrial/30min latent heat flux/collection.json
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Expand Up @@ -42,7 +42,7 @@
},
{
"rel": "describedby",
"href": "https://projects.ecoforecast.org/neon4cast-dashboard/",
"href": "https://projects.ecoforecast.org/neon4cast-docs/",
"title": "NEON Forecast Challenge Dashboard",
"type": "text/html"
}
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2 changes: 1 addition & 1 deletion catalog/forecasts/Terrestrial/Daily Net ecosystem exchange/collection.json
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Expand Up @@ -122,7 +122,7 @@
},
{
"rel": "describedby",
"href": "https://projects.ecoforecast.org/neon4cast-dashboard/",
"href": "https://projects.ecoforecast.org/neon4cast-docs/",
"title": "NEON Forecast Challenge Dashboard",
"type": "text/html"
}
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2 changes: 1 addition & 1 deletion catalog/forecasts/Terrestrial/collection.json
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Expand Up @@ -57,7 +57,7 @@
},
{
"rel": "describedby",
"href": "https://projects.ecoforecast.org/neon4cast-dashboard/",
"href": "https://projects.ecoforecast.org/neon4cast-docs/",
"title": "NEON Forecast Challenge Dashboard",
"type": "text/html"
}
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2 changes: 1 addition & 1 deletion catalog/forecasts/Ticks/Weekly Amblyomma americanum population/collection.json
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Expand Up @@ -102,7 +102,7 @@
},
{
"rel": "describedby",
"href": "https://projects.ecoforecast.org/neon4cast-dashboard/",
"href": "https://projects.ecoforecast.org/neon4cast-docs/",
"title": "NEON Forecast Challenge Dashboard",
"type": "text/html"
}
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2 changes: 1 addition & 1 deletion catalog/forecasts/Ticks/collection.json
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Expand Up @@ -42,7 +42,7 @@
},
{
"rel": "describedby",
"href": "https://projects.ecoforecast.org/neon4cast-dashboard/",
"href": "https://projects.ecoforecast.org/neon4cast-docs/",
"title": "NEON Forecast Challenge Dashboard",
"type": "text/html"
}
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2 changes: 1 addition & 1 deletion catalog/forecasts/collection.json
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Expand Up @@ -73,7 +73,7 @@
},
{
"rel": "describedby",
"href": "https://projects.ecoforecast.org/neon4cast-dashboard/",
"href": "https://projects.ecoforecast.org/neon4cast-docs/",
"title": "NEON Forecast Challenge Dashboard",
"type": "text/html"
}
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8 changes: 3 additions & 5 deletions catalog/forecasts/forecast_models.R
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Expand Up @@ -62,11 +62,9 @@ stac4cast::build_forecast_scores(table_schema = forecast_theme_df,
description_string = build_description,
about_string = catalog_config$about_string,
about_title = catalog_config$about_title,
# dashboard_string = catalog_config$dashboard_url,
# dashboard_title = catalog_config$dashboard_title,
theme_title = "Forecasts",
destination_path = catalog_config$forecast_path,
aws_download_path = catalog_config$aws_download_path,
aws_download_path = catalog_config$aws_download_path_forecasts,
link_items = stac4cast::generate_group_values(group_values = names(config$variable_groups)),
thumbnail_link = catalog_config$forecasts_thumbnail,
thumbnail_title = catalog_config$forecasts_thumbnail_title)
Expand All @@ -89,7 +87,7 @@ stac4cast::build_group_variables(table_schema = forecast_theme_df,
theme_title = "Models",
#model_documentation = NULL,
destination_path = paste0(catalog_config$forecast_path,"models"),
aws_download_path = catalog_config$aws_download_path,
aws_download_path = catalog_config$aws_download_path_forecasts,
group_var_items = stac4cast::generate_model_items(model_list = theme_models$model_id),
thumbnail_link = 'pending',
thumbnail_title = 'pending',
Expand Down Expand Up @@ -219,7 +217,7 @@ for (i in 1:length(config$variable_groups)){ ## organize variable groups
dashboard_title = catalog_config$dashboard_title,
theme_title = names(config$variable_groups[i]),
destination_path = paste0(catalog_config$forecast_path,names(config$variable_groups[i])),
aws_download_path = catalog_config$aws_download_path,
aws_download_path = catalog_config$aws_download_path_forecasts,
group_var_items = stac4cast::generate_group_variable_items(variables = var_name_combined_list),
thumbnail_link = config$variable_groups[[i]]$thumbnail_link,
thumbnail_title = config$variable_groups[[i]]$thumbnail_title,
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2 changes: 1 addition & 1 deletion catalog/forecasts/models/collection.json
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Expand Up @@ -282,7 +282,7 @@
},
{
"rel": "describedby",
"href": "https://projects.ecoforecast.org/neon4cast-dashboard/",
"href": "https://projects.ecoforecast.org/neon4cast-docs/",
"title": "NEON Forecast Challenge Dashboard",
"type": "text/html"
}
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2 changes: 1 addition & 1 deletion catalog/forecasts/models/model_items/GLEON_JRabaey_temp_physics.json
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Expand Up @@ -55,7 +55,7 @@
"properties": {
"description": [],
"start_datetime": "2023-10-19",
"end_datetime": "2023-12-09",
"end_datetime": "2023-12-10",
"providers": [
{
"url": "pending",
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2 changes: 1 addition & 1 deletion catalog/forecasts/models/model_items/GLEON_lm_lag_1day.json
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Expand Up @@ -28,7 +28,7 @@
"properties": {
"description": [],
"start_datetime": "2023-10-19",
"end_datetime": "2023-12-10",
"end_datetime": "2023-12-11",
"providers": [
{
"url": "pending",
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2 changes: 1 addition & 1 deletion catalog/forecasts/models/model_items/GLEON_physics.json
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Expand Up @@ -28,7 +28,7 @@
"properties": {
"description": [],
"start_datetime": "2023-10-19",
"end_datetime": "2023-12-10",
"end_datetime": "2023-12-11",
"providers": [
{
"url": "pending",
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2 changes: 1 addition & 1 deletion catalog/forecasts/models/model_items/USGSHABs1.json
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Expand Up @@ -24,7 +24,7 @@
"properties": {
"description": [],
"start_datetime": "2023-10-19",
"end_datetime": "2023-12-10",
"end_datetime": "2023-12-11",
"providers": [
{
"url": "pending",
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2 changes: 1 addition & 1 deletion catalog/forecasts/models/model_items/air2waterSat_2.json
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Expand Up @@ -55,7 +55,7 @@
"properties": {
"description": [],
"start_datetime": "2023-10-19",
"end_datetime": "2023-12-11",
"end_datetime": "2023-12-12",
"providers": [
{
"url": "pending",
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2 changes: 1 addition & 1 deletion catalog/forecasts/models/model_items/baseline_ensemble.json
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Expand Up @@ -99,7 +99,7 @@
"properties": {
"description": [],
"start_datetime": "2023-10-19",
"end_datetime": "2023-12-06",
"end_datetime": "2023-12-07",
"providers": [
{
"url": "pending",
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2 changes: 1 addition & 1 deletion catalog/forecasts/models/model_items/cb_prophet.json
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Expand Up @@ -102,7 +102,7 @@
"properties": {
"description": [],
"start_datetime": "2023-10-20",
"end_datetime": "2023-12-10",
"end_datetime": "2023-12-11",
"providers": [
{
"url": "pending",
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2 changes: 1 addition & 1 deletion catalog/forecasts/models/model_items/fARIMA.json
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Expand Up @@ -55,7 +55,7 @@
"properties": {
"description": [],
"start_datetime": "2023-11-05",
"end_datetime": "2023-12-11",
"end_datetime": "2023-12-12",
"providers": [
{
"url": "pending",
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2 changes: 1 addition & 1 deletion catalog/forecasts/models/model_items/fARIMA_clim_ensemble.json
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Expand Up @@ -50,7 +50,7 @@
"properties": {
"description": [],
"start_datetime": "2023-10-19",
"end_datetime": "2023-12-06",
"end_datetime": "2023-12-07",
"providers": [
{
"url": "pending",
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2 changes: 1 addition & 1 deletion catalog/forecasts/models/model_items/fTSLM_lag.json
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Expand Up @@ -55,7 +55,7 @@
"properties": {
"description": [],
"start_datetime": "2023-11-05",
"end_datetime": "2023-12-11",
"end_datetime": "2023-12-12",
"providers": [
{
"url": "pending",
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2 changes: 1 addition & 1 deletion catalog/forecasts/models/model_items/flareGLM.json
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Expand Up @@ -28,7 +28,7 @@
"properties": {
"description": [],
"start_datetime": "2023-10-20",
"end_datetime": "2023-12-07",
"end_datetime": "2023-12-08",
"providers": [
{
"url": "pending",
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2 changes: 1 addition & 1 deletion catalog/forecasts/models/model_items/flareGLM_noDA.json
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Expand Up @@ -28,7 +28,7 @@
"properties": {
"description": [],
"start_datetime": "2023-10-20",
"end_datetime": "2023-12-07",
"end_datetime": "2023-12-08",
"providers": [
{
"url": "pending",
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2 changes: 1 addition & 1 deletion catalog/forecasts/models/model_items/flareGOTM.json
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Expand Up @@ -27,7 +27,7 @@
"properties": {
"description": [],
"start_datetime": "2023-10-20",
"end_datetime": "2023-12-07",
"end_datetime": "2023-12-08",
"providers": [
{
"url": "pending",
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2 changes: 1 addition & 1 deletion catalog/forecasts/models/model_items/flareGOTM_noDA.json
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Expand Up @@ -27,7 +27,7 @@
"properties": {
"description": [],
"start_datetime": "2023-10-20",
"end_datetime": "2023-12-07",
"end_datetime": "2023-12-08",
"providers": [
{
"url": "pending",
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2 changes: 1 addition & 1 deletion catalog/forecasts/models/model_items/flareSimstrat.json
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Expand Up @@ -27,7 +27,7 @@
"properties": {
"description": [],
"start_datetime": "2023-10-20",
"end_datetime": "2023-12-07",
"end_datetime": "2023-12-08",
"providers": [
{
"url": "pending",
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2 changes: 1 addition & 1 deletion catalog/forecasts/models/model_items/flareSimstrat_noDA.json
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Expand Up @@ -26,7 +26,7 @@
"properties": {
"description": [],
"start_datetime": "2023-10-20",
"end_datetime": "2023-12-07",
"end_datetime": "2023-12-08",
"providers": [
{
"url": "pending",
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2 changes: 1 addition & 1 deletion catalog/forecasts/models/model_items/flare_ler.json
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Expand Up @@ -27,7 +27,7 @@
"properties": {
"description": [],
"start_datetime": "2023-10-19",
"end_datetime": "2023-12-06",
"end_datetime": "2023-12-07",
"providers": [
{
"url": "pending",
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2 changes: 1 addition & 1 deletion catalog/forecasts/models/model_items/flare_ler_baselines.json
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Expand Up @@ -27,7 +27,7 @@
"properties": {
"description": [],
"start_datetime": "2023-10-19",
"end_datetime": "2023-12-06",
"end_datetime": "2023-12-07",
"providers": [
{
"url": "pending",
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2 changes: 1 addition & 1 deletion catalog/forecasts/models/model_items/lasso.json
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Expand Up @@ -68,7 +68,7 @@
"properties": {
"description": [],
"start_datetime": "2023-10-19",
"end_datetime": "2023-12-10",
"end_datetime": "2023-12-11",
"providers": [
{
"url": "pending",
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2 changes: 1 addition & 1 deletion catalog/forecasts/models/model_items/null.json
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Expand Up @@ -55,7 +55,7 @@
"properties": {
"description": [],
"start_datetime": "2023-01-10",
"end_datetime": "2024-10-02",
"end_datetime": "2024-10-03",
"providers": [
{
"url": "pending",
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2 changes: 1 addition & 1 deletion catalog/forecasts/models/model_items/prophet_clim_ensemble.json
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Expand Up @@ -67,7 +67,7 @@
"properties": {
"description": [],
"start_datetime": "2023-10-18",
"end_datetime": "2023-12-06",
"end_datetime": "2023-12-07",
"providers": [
{
"url": "pending",
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2 changes: 1 addition & 1 deletion catalog/forecasts/models/model_items/randfor.json
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Expand Up @@ -68,7 +68,7 @@
"properties": {
"description": [],
"start_datetime": "2023-10-19",
"end_datetime": "2023-12-10",
"end_datetime": "2023-12-11",
"providers": [
{
"url": "pending",
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