Merge branch 'main' of https://github.com/eco4cast/neon4cast-ci

eco4cast · Dec 7, 2023 · 6ed447f · 6ed447f
2 parents cb49f97 + a2c5f11
commit 6ed447f
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Showing 27 changed files with 648 additions and 648 deletions.
diff --git a/catalog/noaa_forecasts/collection.json b/catalog/noaa_forecasts/collection.json
@@ -166,12 +166,12 @@
       "description": "Use `arrow` for remote access to the database. This R code will return results for the VERA Forecasting Challenge.\n\n### R\n\n```{r}\n# Use code below\n\nall_results <- arrow::open_dataset(s3://anonymous@drivers/noaa/gefs-v12-reprocess/?endpoint_override=s3.flare-forecast.org)\ndf <- all_results |> dplyr::collect()\n\n```\n       \n\nYou can use dplyr operations before calling `dplyr::collect()` to `summarise`, `select` columns, and/or `filter` rows prior to pulling the data into a local `data.frame`. Reducing the data that is pulled locally will speed up the data download speed and reduce your memory usage.\n\n\n"
     },
     "thumbnail": {
-      "href": "https://raw.githubusercontent.com/eco4cast/neon4cast-ci/main/catalog/thumbnail_plots/51629805865_0ef01ffbbc_c.jpg",
+      "href": "https://raw.githubusercontent.com/eco4cast/neon4cast-ci/main/catalog/thumbnail_plots/neon_wetland.jpg",
       "type": "image/JPEG",
       "roles": [
         "thumbnail"
       ],
-      "title": "NEON Buoy Image"
+      "title": "NEON Image"
     }
   }
 }
diff --git a/catalog/scores/Aquatics/Daily_Chlorophyll_a/collection.json b/catalog/scores/Aquatics/Daily_Chlorophyll_a/collection.json
@@ -108,22 +108,22 @@
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/procEppleyNorbergMonod.json"
+      "href": "../../models/model_items/procCTMIMonod.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/tg_lasso.json"
+      "href": "../../models/model_items/tg_randfor.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/tg_randfor.json"
+      "href": "../../models/model_items/procEppleyNorbergMonod.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/procCTMIMonod.json"
+      "href": "../../models/model_items/tg_lasso.json"
     },
     {
       "rel": "item",

diff --git a/catalog/scores/Aquatics/Daily_Dissolved_oxygen/collection.json b/catalog/scores/Aquatics/Daily_Dissolved_oxygen/collection.json
@@ -38,42 +38,37 @@
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/tg_lasso_all_sites.json"
-    },
-    {
-      "rel": "item",
-      "type": "application/json",
-      "href": "../../models/model_items/tg_precip_lm_all_sites.json"
+      "href": "../../models/model_items/cb_f1.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/tg_randfor_all_sites.json"
+      "href": "../../models/model_items/climatology.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/tg_tbats.json"
+      "href": "../../models/model_items/persistenceRW.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/cb_f1.json"
+      "href": "../../models/model_items/tg_lasso_all_sites.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/climatology.json"
+      "href": "../../models/model_items/tg_randfor.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/persistenceRW.json"
+      "href": "../../models/model_items/tg_randfor_all_sites.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/tg_randfor.json"
+      "href": "../../models/model_items/tg_tbats.json"
     },
     {
       "rel": "item",
@@ -88,7 +83,7 @@
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/tg_humidity_lm.json"
+      "href": "../../models/model_items/tg_precip_lm_all_sites.json"
     },
     {
       "rel": "item",
@@ -100,6 +95,11 @@
       "type": "application/json",
       "href": "../../models/model_items/null.json"
     },
+    {
+      "rel": "item",
+      "type": "application/json",
+      "href": "../../models/model_items/tg_humidity_lm.json"
+    },
     {
       "rel": "item",
       "type": "application/json",

diff --git a/catalog/scores/Aquatics/Daily_Water_temperature/collection.json b/catalog/scores/Aquatics/Daily_Water_temperature/collection.json
@@ -68,102 +68,102 @@
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/cb_f1.json"
+      "href": "../../models/model_items/air2waterSat_2.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/climatology.json"
+      "href": "../../models/model_items/fARIMA.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/flare_ler.json"
+      "href": "../../models/model_items/fTSLM_lag.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/tg_bag_mlp.json"
+      "href": "../../models/model_items/flareGOTM.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/tg_humidity_lm.json"
+      "href": "../../models/model_items/flare_ler.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/tg_precip_lm.json"
+      "href": "../../models/model_items/tg_lasso_all_sites.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/tg_randfor_all_sites.json"
+      "href": "../../models/model_items/tg_randfor.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/tg_temp_lm.json"
+      "href": "../../models/model_items/tg_bag_mlp.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/tg_temp_lm_all_sites.json"
+      "href": "../../models/model_items/tg_humidity_lm.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/tg_randfor.json"
+      "href": "../../models/model_items/tg_lasso.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/air2waterSat_2.json"
+      "href": "../../models/model_items/tg_precip_lm.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/cb_prophet.json"
+      "href": "../../models/model_items/tg_precip_lm_all_sites.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/fARIMA.json"
+      "href": "../../models/model_items/tg_temp_lm.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/flareSimstrat_noDA.json"
+      "href": "../../models/model_items/cb_prophet.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/fTSLM_lag.json"
+      "href": "../../models/model_items/flareSimstrat_noDA.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/flareGOTM.json"
+      "href": "../../models/model_items/flare_ler_baselines.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/tg_lasso_all_sites.json"
+      "href": "../../models/model_items/cb_f1.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/flare_ler_baselines.json"
+      "href": "../../models/model_items/climatology.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/tg_lasso.json"
+      "href": "../../models/model_items/tg_randfor_all_sites.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/tg_precip_lm_all_sites.json"
+      "href": "../../models/model_items/tg_temp_lm_all_sites.json"
     },
     {
       "rel": "item",
@@ -178,12 +178,12 @@
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/GLEON_physics.json"
+      "href": "../../models/model_items/tg_humidity_lm_all_sites.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/tg_humidity_lm_all_sites.json"
+      "href": "../../models/model_items/GLEON_physics.json"
     },
     {
       "rel": "item",

diff --git a/catalog/scores/Phenology/Daily_Red_chromatic_coordinate/collection.json b/catalog/scores/Phenology/Daily_Red_chromatic_coordinate/collection.json
@@ -10,6 +10,11 @@
   ],
   "type": "Collection",
   "links": [
+    {
+      "rel": "item",
+      "type": "application/json",
+      "href": "../../models/model_items/baseline_ensemble.json"
+    },
     {
       "rel": "item",
       "type": "application/json",
@@ -53,37 +58,32 @@
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/baseline_ensemble.json"
-    },
-    {
-      "rel": "item",
-      "type": "application/json",
-      "href": "../../models/model_items/tg_bag_mlp.json"
+      "href": "../../models/model_items/tg_humidity_lm.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/tg_randfor.json"
+      "href": "../../models/model_items/tg_lasso.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/tg_humidity_lm.json"
+      "href": "../../models/model_items/tg_precip_lm.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/tg_lasso.json"
+      "href": "../../models/model_items/tg_temp_lm.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/tg_precip_lm.json"
+      "href": "../../models/model_items/tg_bag_mlp.json"
     },
     {
       "rel": "item",
       "type": "application/json",
-      "href": "../../models/model_items/tg_temp_lm.json"
+      "href": "../../models/model_items/tg_randfor.json"
     },
     {
       "rel": "item",

diff --git a/catalog/scores/Terrestrial/Daily_Net_ecosystem_exchange/collection.json b/catalog/scores/Terrestrial/Daily_Net_ecosystem_exchange/collection.json
@@ -50,11 +50,6 @@
       "type": "application/json",
       "href": "../../models/model_items/tg_precip_lm_all_sites.json"
     },
-    {
-      "rel": "item",
-      "type": "application/json",
-      "href": "../../models/model_items/tg_precip_lm.json"
-    },
     {
       "rel": "item",
       "type": "application/json",
@@ -75,6 +70,11 @@
       "type": "application/json",
       "href": "../../models/model_items/randfor.json"
     },
+    {
+      "rel": "item",
+      "type": "application/json",
+      "href": "../../models/model_items/tg_precip_lm.json"
+    },
     {
       "rel": "item",
       "type": "application/json",