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Added striatum scaffold (#22)
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Hjorthmedh authored Nov 30, 2022
1 parent 36255ec commit 5e7694e
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44 changes: 44 additions & 0 deletions usecases-info.json
Original file line number Diff line number Diff line change
Expand Up @@ -487,6 +487,50 @@
"dataProtected": true,
"externalUrl": "https://olfactory-bulb.cineca.it/",
"tutorial": null
},
{
"id": "striatum_scaffold_create",
"title": "Striatum Scaffold model (create)",
"description": "This notebook creates a scaffold model for the mouse striatum microcircuit. The neuron models are based on reconstructed morphologies and electrophysiological experiments optimised using BluePyOpt. The neurons are placed in a volume, and the synapses are placed in locations where the axons and dendrites overlap. Pair wise connectivity matches experimental data.",
"experience": ["all"],
"maturity": ["beta"],
"access": null,
"dataProtected": false,
"implementation": "ipynb",
"disabled": false,
"contributors": [
{ "name": "Johannes Hjorth", "email": "[email protected]" },
{ "name": "Alexander Kozlov", "email": "[email protected]" }
],
"picture": {
"src": "https://raw.githubusercontent.com/ebrains-cls-interactive/usecases-info/develop/images/smallcircuitinsilicoexperiments/striatum-scaffold.png"
},
"externalUrl": "https://github.com/hjorthmedh/Snudda",
"tutorial": null,
"notebookPath": "striatum_example.ipynb",
"notebookRepoUrl": "https://lab.ch.ebrains.eu/user/hjorth/lab/workspaces/auto-r/tree/shared/Striatum%20Scaffold%20Model"
},
{
"id": "striatum_scaffold_simulate",
"title": "Striatum Scaffold model (simulate)",
"description": "This notebook simulates a scaffold model for the mouse striatum microcircuit. This notebook uses the microcircuit created by the Striatum Scaffold model (create) notebook.",
"experience": ["all"],
"maturity": ["beta"],
"access": null,
"dataProtected": false,
"implementation": "ipynb",
"disabled": false,
"contributors": [
{ "name": "Johannes Hjorth", "email": "[email protected]" },
{ "name": "Alexander Kozlov", "email": "[email protected]" }
],
"picture": {
"src": "https://raw.githubusercontent.com/ebrains-cls-interactive/usecases-info/develop/images/smallcircuitinsilicoexperiments/striatum-scaffold.png"
},
"externalUrl": "https://github.com/hjorthmedh/Snudda",
"tutorial": null,
"notebookPath": "striatum_example_simulate.ipynb",
"notebookRepoUrl": "https://lab.ch.ebrains.eu/user/hjorth/lab/workspaces/auto-r/tree/shared/Striatum%20Scaffold%20Model"
}
]
},
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