Edit run_tertiary_workflow.sh (migration to Nextflow DSL2) #38
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pmb59
commented
Nov 5, 2024
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pmb59
commented
- Remember to update the other submodules before merging
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anilthanki
reviewed
Nov 7, 2024
| -i $inputs_yaml \ | ||
| -o $WORKDIR \ | ||
| -W $flavor_dir/scanpy_clustering_workflow.json \ | ||
| -P $parameters_yaml \ |
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As far as I understand parameters.yaml file is the params per step and addition of cell_type_field, batch_variable and representation
We have set parameters per process and three additional params, we pass them as NF param so this is not needed
Please correct me if i am wrong
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@anilthanki please check that you are happy with 3a8da36
anilthanki
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Nov 7, 2024
anilthanki
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Nov 7, 2024
anilthanki
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Nov 7, 2024
anilthanki
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Nov 19, 2024
Co-authored-by: Anil Thanki <[email protected]>
pmb59
commented
Nov 27, 2024
Co-authored-by: Anil Thanki <[email protected]>
Co-authored-by: Anil Thanki <[email protected]>
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