Changes for CI

run_tests_with_containers.sh

@@ -18,7 +18,7 @@ rm -rf venv-test
 python3 -m venv venv-test
 source venv-test/bin/activate
 pip install wheel
-pip install . 'ephemeris==0.10.8' 'galaxy-parsec==1.13.0'
+pip install ephemeris galaxy-parsec
 galaxy-wait -g http://localhost:8080/
 echo "Galaxy is up and running"
 parsec -g test -f test/parsec_creds.yaml users get_users
@@ -45,6 +45,12 @@ echo "File library ID: $file_library_id"
 
 sed "s/<INPUT_TO_MERGE_LIBRARY_ID>/$file_library_id/" test/wf_inputs.yaml.template > test/wf_inputs.yaml
 
+deactivate
+python3 -m venv venv-wfe
+source venv-wfe/bin/activate
+pip install wheel
+pip install .
+
 mkdir -p test_out
 run_galaxy_workflow.py -C test/creds.yaml \
     -G test -o test_out/ -H 'test history' -W test/wf.json \

setup.py

@@ -14,7 +14,7 @@ def readme():
         description='Execute workflows on Galaxy through the CLI',
         long_description=readme(),
         packages=find_packages(),
-        install_requires=['bioblend==1.2.0'],
+        install_requires=['bioblend==1.3.0', 'PyYAML'],
         author='Suhaib Mohammed, Pablo Moreno, Anil Thanki',
         long_description_content_type='text/markdown',
         author_email='',