Export unique UniProt IDs in Atlas as Atlas search links #181
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| name: Test JSON schema transforation in container | |
| on: [push, pull_request] | |
| jobs: | |
| run_test: | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Add workspace to path | |
| run: | | |
| echo "${GITHUB_WORKSPACE}" >> $GITHUB_PATH | |
| - name: Fetch container | |
| run: | | |
| docker pull quay.io/ebigxa/json_schema_transform | |
| - name: Setup BATS | |
| uses: mig4/setup-bats@v1 | |
| with: | |
| bats-version: 1.2.1 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install python testing deps | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install pytest | |
| - name: Run test script | |
| run: | | |
| run_tests.sh |