Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add consistency between cell plots tab and marker genes tab #388

Merged
merged 10 commits into from
May 9, 2024
Merged

Add consistency between cell plots tab and marker genes tab #388

Changes from 1 commit
Commits
Show all changes
10 commits
Select commit Hold shift + click to select a range
5ffbf2f
Add logics to make cell plot & marker gene plot ..
lingyun1010 Mar 21, 2024
8a3290e
Fix a typo
lingyun1010 Apr 8, 2024
13d469d
Refactor update url code in router
lingyun1010 Apr 8, 2024
ee06e00
Merge branch '381-inconsistency-between-cell-plot-and-heat-map' of ht…
lingyun1010 Apr 8, 2024
017e50a
Merge branch 'develop' into 381-inconsistency-between-cell-plot-and-h…
lingyun1010 Apr 10, 2024
0361b3f
Refactor and clean codes in TSnePlotViewRoute
lingyun1010 Apr 17, 2024
f3886a7
Merge branch '381-inconsistency-between-cell-plot-and-heat-map' of ht…
lingyun1010 Apr 17, 2024
5b75378
Update app/src/main/javascript/bundles/experiment-page/src/TSnePlotVi…
lingyun1010 Apr 24, 2024
c403386
Fix the code format
lingyun1010 May 1, 2024
ff95ed5
Merge branch 'develop' into 381-inconsistency-between-cell-plot-and-h…
lingyun1010 May 9, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
35 changes: 23 additions & 12 deletions app/src/main/javascript/bundles/experiment-page/src/TSnePlotViewRoute.js
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -28,6 +28,9 @@ RedirectWithSearchAndHash.propTypes = {

const RedirectWithLocation = withRouter(RedirectWithSearchAndHash)

const CLUSTERS_PLOT = `clusters`
const METADATA_PLOT = `metatdata`
lingyun1010 marked this conversation as resolved.
Show resolved Hide resolved

class TSnePlotViewRoute extends React.Component {
constructor(props) {
super(props)
Expand All @@ -42,7 +45,7 @@ class TSnePlotViewRoute extends React.Component {
selectedColourBy: cellTypeValue ? cellTypeValue.toLowerCase() : this.props.ks[Math.round((this.props.ks.length -1) / 2)].toString(),
highlightClusters: [],
experimentAccession: this.props.experimentAccession,
selectedColourByCategory: isNaN(search.colourBy) ? `metadata` : `clusters`,
selectedColourByCategory: isNaN(search.colourBy) ? METADATA_PLOT : CLUSTERS_PLOT,
selectedClusterId: cellTypeValue ? cellTypeValue.toLowerCase() : this.props.ks[Math.round((this.props.ks.length -1) / 2)].toString(),
selectedClusterIdOption: ``
}
Expand Down Expand Up @@ -74,7 +77,7 @@ class TSnePlotViewRoute extends React.Component {

const routes = [
{
path: `/tsne`,
path: `/cell-plots`,
lingyun1010 marked this conversation as resolved.
Show resolved Hide resolved
title: `Cell plots`,
main: () => <TSnePlotView
atlasUrl={atlasUrl}
Expand Down Expand Up @@ -104,14 +107,15 @@ class TSnePlotViewRoute extends React.Component {
}
plotTypeDropdown={plotTypeDropdown}
selectedPlotOptionLabel={search.plotOption ?
search.plotType ?
Object.keys(plotTypeDropdown[plotTypeDropdown.findIndex(
(plot) => plot.plotType.toLowerCase() === search.plotType.toLowerCase())].plotOptions[0])[0] + `: ` + search.plotOption
:
Object.keys(plotTypeDropdown[plotTypeDropdown.findIndex(
(plot) => plot.plotType.toLowerCase() === this.state.selectedPlotType.toLowerCase())].plotOptions[0])[0] + `: ` + search.plotOption
:
this.state.selectedPlotOptionLabel}
search.plotType ?
Object.keys(plotTypeDropdown[plotTypeDropdown.findIndex(
(plot) => plot.plotType.toLowerCase() === search.plotType.toLowerCase())].plotOptions[0])[0] + `: ` + search.plotOption
:
Object.keys(plotTypeDropdown[plotTypeDropdown.findIndex(
(plot) => plot.plotType.toLowerCase() === this.state.selectedPlotType.toLowerCase())].plotOptions[0])[0] + `: ` + search.plotOption
:
this.state.selectedPlotOptionLabel
}
onChangePlotTypes={
(plotOption) => {
this.setState({
Expand Down Expand Up @@ -147,8 +151,12 @@ class TSnePlotViewRoute extends React.Component {
selectedColourBy : colourByValue,
selectedColourByCategory : colourByCategory
})
colourByCategory === CLUSTERS_PLOT && this.setState({
selectedClusterId : colourByValue
})
const query = new URLSearchParams(history.location.search)
query.set(`colourBy`, colourByValue)
colourByCategory === CLUSTERS_PLOT && query.set(`k`, colourByValue)
resetHighlightClusters(query)
updateUrlWithParams(query)
}
Expand All @@ -172,14 +180,17 @@ class TSnePlotViewRoute extends React.Component {
wrapperClassName={`row expanded`}
ks={ks}
selectedClusterByCategory={search.cellGroupType || search.k || preferredK}
selectedK={this.state.selectedClusterId}
selectedK={this.state.colourByCategory === CLUSTERS_PLOT ? this.state.selectedColourBy : this.state.selectedClusterId}
onSelectK={(colourByValue) => {
this.setState({
selectedClusterId : colourByValue
selectedClusterId : colourByValue,
selectedColourBy : colourByValue,
selectedColourByCategory : CLUSTERS_PLOT
})
const query = new URLSearchParams(history.location.search)
// If tsne plot is coloured by k
query.set(`k`, colourByValue)
query.set(`colourBy`, colourByValue)
resetHighlightClusters(query)
updateUrlWithParams(query)
}
Expand Down
Loading