[Feature] Add gut anatomogram (#359)

* Pull and update latest submodule changes * Add intestine into the SupportedOrgan enum * Reformat gut enum for supportedOrgan * Set region/zone for pods to match volume locations --------- Co-authored-by: lingyun1010 <[email protected]> Co-authored-by: Alfonso Muñoz-Pomer Fuentes <[email protected]>
ebi-gene-expression-group · Oct 11, 2023 · 8923733 · 8923733
1 parent 4839fdb
commit 8923733
Show file tree

Hide file tree

Showing 2 changed files with 9 additions and 15 deletions.
diff --git a/app/src/main/java/uk/ac/ebi/atlas/search/OntologyAccessionsSearchService.java b/app/src/main/java/uk/ac/ebi/atlas/search/OntologyAccessionsSearchService.java
@@ -2,6 +2,7 @@
 
 import com.google.common.collect.ImmutableMap;
 import com.google.common.collect.ImmutableSet;
+import lombok.Getter;
 import org.springframework.stereotype.Service;
 import uk.ac.ebi.atlas.model.OntologyTerm;
 
@@ -11,34 +12,25 @@
 import static com.google.common.collect.ImmutableMap.toImmutableMap;
 import static com.google.common.collect.ImmutableSet.toImmutableSet;
 
+@Getter
 enum SupportedOrgan {
     PANCREAS("pancreas", "http://purl.obolibrary.org/obo/UBERON_0001264"),
     KIDNEY("kidney", "http://purl.obolibrary.org/obo/UBERON_0002113"),
     LIVER("liver", "http://purl.obolibrary.org/obo/UBERON_0002107"),
     PLACENTA("placenta", "http://purl.obolibrary.org/obo/UBERON_0001987"),
-    LUNG("lung", "http://purl.obolibrary.org/obo/UBERON_0002048");
+    LUNG("lung", "http://purl.obolibrary.org/obo/UBERON_0002048"),
+    GUT("gut", "http://purl.obolibrary.org/obo/UBERON_0000160");
 
-    String name;
-    String ontologyUri;
-    String ontologyAccession;
+    final String name;
+    final String ontologyUri;
+    final String ontologyAccession;
 
     SupportedOrgan(String name, String ontologyUri) {
         this.name = name;
         this.ontologyUri = ontologyUri;
         this.ontologyAccession = OntologyTerm.create(ontologyUri).accession();
     }
 
-    public String getName() {
-        return name;
-    }
-
-    public String getOntologyUri() {
-        return ontologyUri;
-    }
-
-    public String getOntologyAccession() {
-        return ontologyAccession;
-    }
 }
 
 

diff --git a/jenkins-k8s-pod.yaml b/jenkins-k8s-pod.yaml
@@ -3,6 +3,8 @@ kind: Pod
 metadata:
   namespace: jenkins-gene-expression
 spec:
+  nodeSelector:
+    topology.kubernetes.io/zone: "europe-west2-a"
   serviceAccountName: admin-jenkins-gene-expression
   # If we set workspaceVolume dynamicPVC() or workspaceVolume persistentVolumeClaimWorkspaceVolume() we need to add a
   # fsGroup 1000 to make the /home/jenkins/agent directory writable. Otherwise, we get the following exception in the