Feature/configuration update (#13)

* Update release numbers- Ensembl 94 EnsemblGenomes 41 Wormbase 11 * added bacteria enesmbl links to scala code and removed unigene from a-l * removed attribute that doesnt exist for oryza_nivara populus_trichocarpa saccharomyces_cerevisiae * removed bacteria ensembl urls
ebi-gene-expression-group · Oct 19, 2018 · 1fbe68f · 1fbe68f
1 parent bd898ee
commit 1fbe68f
Show file tree

Hide file tree

Showing 82 changed files with 88 additions and 101 deletions.
diff --git a/annsrcs/ensembl/aegilops_tauschii b/annsrcs/ensembl/aegilops_tauschii
@@ -1,5 +1,5 @@
 software.name=plants
-software.version=39
+software.version=41
 url=http://plants.ensembl.org/biomart/martservice?
 organism=aegilops tauschii
 databaseName=plants

diff --git a/annsrcs/ensembl/amborella_trichopoda b/annsrcs/ensembl/amborella_trichopoda
@@ -1,5 +1,5 @@
 software.name=plants
-software.version=39
+software.version=41
 url=http://plants.ensembl.org/biomart/martservice?
 organism=amborella trichopoda
 databaseName=plants

diff --git a/annsrcs/ensembl/anas_platyrhynchos b/annsrcs/ensembl/anas_platyrhynchos
@@ -1,5 +1,5 @@
 software.name=ensembl
-software.version=92
+software.version=94
 url=http://www.ensembl.org/biomart/martservice?
 organism=anas platyrhynchos
 databaseName=ensembl

diff --git a/annsrcs/ensembl/anolis_carolinensis b/annsrcs/ensembl/anolis_carolinensis
@@ -1,5 +1,5 @@
 software.name=ensembl
-software.version=92
+software.version=94
 url=http://www.ensembl.org/biomart/martservice?
 organism=anolis carolinensis
 databaseName=ensembl
@@ -26,6 +26,5 @@ property.mirbase_id=mirbase_id
 property.ortholog=dnovemcinctus_homolog_ensembl_gene,cintestinalis_homolog_ensembl_gene,csavignyi_homolog_ensembl_gene,celegans_homolog_ensembl_gene,ggallus_homolog_ensembl_gene,ptroglodytes_homolog_ensembl_gene,btaurus_homolog_ensembl_gene,cfamiliaris_homolog_ensembl_gene,aplatyrhynchos_homolog_ensembl_gene,dmelanogaster_homolog_ensembl_gene,ggorilla_homolog_ensembl_gene,ecaballus_homolog_ensembl_gene,hsapiens_homolog_ensembl_gene,mmulatta_homolog_ensembl_gene,mmusculus_homolog_ensembl_gene,panubis_homolog_ensembl_gene,mdomestica_homolog_ensembl_gene,pabelii_homolog_ensembl_gene,sscrofa_homolog_ensembl_gene,oanatinus_homolog_ensembl_gene,ocuniculus_homolog_ensembl_gene,rnorvegicus_homolog_ensembl_gene,scerevisiae_homolog_ensembl_gene,oaries_homolog_ensembl_gene,tnigroviridis_homolog_ensembl_gene,csabaeus_homolog_ensembl_gene,xtropicalis_homolog_ensembl_gene,drerio_homolog_ensembl_gene
 property.refseq=refseq_peptide
 property.symbol=external_gene_name
-property.unigene=unigene
 property.uniprot=uniprotsptrembl,uniprotswissprot
 
diff --git a/annsrcs/ensembl/anopheles_gambiae b/annsrcs/ensembl/anopheles_gambiae
@@ -1,5 +1,5 @@
 software.name=metazoa
-software.version=39
+software.version=41
 url=http://metazoa.ensembl.org/biomart/martservice?
 organism=anopheles gambiae
 databaseName=metazoa
@@ -20,5 +20,4 @@ property.interpro=interpro
 property.interproterm=interpro_description
 property.refseq=refseq_peptide
 property.symbol=external_gene_name
-property.unigene=unigene
 property.uniprot=uniprotsptrembl,uniprotswissprot
diff --git a/annsrcs/ensembl/arabidopsis_lyrata b/annsrcs/ensembl/arabidopsis_lyrata
@@ -1,5 +1,5 @@
 software.name=plants
-software.version=39
+software.version=41
 url=http://plants.ensembl.org/biomart/martservice?
 organism=arabidopsis lyrata
 databaseName=plants

diff --git a/annsrcs/ensembl/arabidopsis_thaliana b/annsrcs/ensembl/arabidopsis_thaliana
@@ -1,5 +1,5 @@
 software.name=plants
-software.version=39
+software.version=41
 url=http://plants.ensembl.org/biomart/martservice?
 organism=arabidopsis thaliana
 databaseName=plants

diff --git a/annsrcs/ensembl/aspergillus_fumigatus b/annsrcs/ensembl/aspergillus_fumigatus
@@ -1,5 +1,5 @@
 software.name=fungi
-software.version=39
+software.version=41
 url=http://fungi.ensembl.org/biomart/martservice?
 organism=aspergillus fumigatus
 databaseName=fungi

diff --git a/annsrcs/ensembl/beta_vulgaris b/annsrcs/ensembl/beta_vulgaris
@@ -1,5 +1,5 @@
 software.name=plants
-software.version=39
+software.version=41
 url=http://plants.ensembl.org/biomart/martservice?
 organism=beta vulgaris
 databaseName=plants

diff --git a/annsrcs/ensembl/bos_taurus b/annsrcs/ensembl/bos_taurus
@@ -1,5 +1,5 @@
 software.name=ensembl
-software.version=92
+software.version=94
 url=http://www.ensembl.org/biomart/martservice?
 organism=bos taurus
 databaseName=ensembl
@@ -27,7 +27,6 @@ property.mirbase_id=mirbase_id
 property.ortholog=acarolinensis_homolog_ensembl_gene,dnovemcinctus_homolog_ensembl_gene,cintestinalis_homolog_ensembl_gene,csavignyi_homolog_ensembl_gene,celegans_homolog_ensembl_gene,ggallus_homolog_ensembl_gene,ptroglodytes_homolog_ensembl_gene,cfamiliaris_homolog_ensembl_gene,aplatyrhynchos_homolog_ensembl_gene,dmelanogaster_homolog_ensembl_gene,ggorilla_homolog_ensembl_gene,ecaballus_homolog_ensembl_gene,hsapiens_homolog_ensembl_gene,mmulatta_homolog_ensembl_gene,mmusculus_homolog_ensembl_gene,panubis_homolog_ensembl_gene,mdomestica_homolog_ensembl_gene,pabelii_homolog_ensembl_gene,sscrofa_homolog_ensembl_gene,oanatinus_homolog_ensembl_gene,ocuniculus_homolog_ensembl_gene,rnorvegicus_homolog_ensembl_gene,scerevisiae_homolog_ensembl_gene,oaries_homolog_ensembl_gene,tnigroviridis_homolog_ensembl_gene,csabaeus_homolog_ensembl_gene,xtropicalis_homolog_ensembl_gene,drerio_homolog_ensembl_gene
 property.refseq=refseq_mrna,refseq_ncrna,refseq_peptide
 property.symbol=external_gene_name
-property.unigene=unigene
 property.uniprot=uniprotsptrembl,uniprotswissprot
 arrayDesign.A-AFFY-128=affy_bovine
 
diff --git a/annsrcs/ensembl/brachypodium_distachyon b/annsrcs/ensembl/brachypodium_distachyon
@@ -1,5 +1,5 @@
 software.name=plants
-software.version=39
+software.version=41
 url=http://plants.ensembl.org/biomart/martservice?
 organism=brachypodium distachyon
 databaseName=plants

diff --git a/annsrcs/ensembl/brassica_napus b/annsrcs/ensembl/brassica_napus
@@ -1,5 +1,5 @@
 software.name=plants
-software.version=39
+software.version=41
 url=http://plants.ensembl.org/biomart/martservice?
 organism=brassica napus
 databaseName=plants

diff --git a/annsrcs/ensembl/brassica_oleracea b/annsrcs/ensembl/brassica_oleracea
@@ -1,5 +1,5 @@
 software.name=plants
-software.version=39
+software.version=41
 url=http://plants.ensembl.org/biomart/martservice?
 organism=brassica oleracea
 databaseName=plants

diff --git a/annsrcs/ensembl/brassica_rapa b/annsrcs/ensembl/brassica_rapa
@@ -1,5 +1,5 @@
 software.name=plants
-software.version=39
+software.version=41
 url=http://plants.ensembl.org/biomart/martservice?
 organism=brassica rapa
 databaseName=plants

diff --git a/annsrcs/ensembl/caenorhabditis_elegans b/annsrcs/ensembl/caenorhabditis_elegans
@@ -1,5 +1,5 @@
 software.name=metazoa
-software.version=39
+software.version=41
 url=http://metazoa.ensembl.org/biomart/martservice?
 organism=caenorhabditis elegans
 datasetName=celegans_eg_gene

diff --git a/annsrcs/ensembl/canis_familiaris b/annsrcs/ensembl/canis_familiaris
@@ -1,5 +1,5 @@
 software.name=ensembl
-software.version=92
+software.version=94
 url=http://www.ensembl.org/biomart/martservice?
 organism=canis familiaris
 databaseName=ensembl

diff --git a/annsrcs/ensembl/chlamydomonas_reinhardtii b/annsrcs/ensembl/chlamydomonas_reinhardtii
@@ -1,5 +1,5 @@
 software.name=plants
-software.version=39
+software.version=41
 url=http://plants.ensembl.org/biomart/martservice?
 organism=chlamydomonas reinhardtii
 databaseName=plants

diff --git a/annsrcs/ensembl/chlorocebus_sabaeus b/annsrcs/ensembl/chlorocebus_sabaeus
@@ -1,5 +1,5 @@
 software.name=ensembl
-software.version=92
+software.version=94
 url=http://www.ensembl.org/biomart/martservice?
 organism=chlorocebus sabaeus
 databaseName=ensembl

diff --git a/annsrcs/ensembl/chondrus_crispus b/annsrcs/ensembl/chondrus_crispus
@@ -1,5 +1,5 @@
 software.name=plants
-software.version=39
+software.version=41
 url=http://plants.ensembl.org/biomart/martservice?
 organism=chondrus crispus
 databaseName=plants

diff --git a/annsrcs/ensembl/ciona_intestinalis b/annsrcs/ensembl/ciona_intestinalis
@@ -1,5 +1,5 @@
 software.name=ensembl
-software.version=92
+software.version=94
 url=http://www.ensembl.org/biomart/martservice?
 organism=ciona intestinalis
 databaseName=ensembl
@@ -26,7 +26,6 @@ property.mirbase_id=mirbase_id
 property.ortholog=acarolinensis_homolog_ensembl_gene,dnovemcinctus_homolog_ensembl_gene,csavignyi_homolog_ensembl_gene,celegans_homolog_ensembl_gene,ggallus_homolog_ensembl_gene,ptroglodytes_homolog_ensembl_gene,btaurus_homolog_ensembl_gene,cfamiliaris_homolog_ensembl_gene,aplatyrhynchos_homolog_ensembl_gene,dmelanogaster_homolog_ensembl_gene,ggorilla_homolog_ensembl_gene,ecaballus_homolog_ensembl_gene,hsapiens_homolog_ensembl_gene,mmulatta_homolog_ensembl_gene,mmusculus_homolog_ensembl_gene,panubis_homolog_ensembl_gene,mdomestica_homolog_ensembl_gene,pabelii_homolog_ensembl_gene,sscrofa_homolog_ensembl_gene,oanatinus_homolog_ensembl_gene,ocuniculus_homolog_ensembl_gene,rnorvegicus_homolog_ensembl_gene,scerevisiae_homolog_ensembl_gene,oaries_homolog_ensembl_gene,tnigroviridis_homolog_ensembl_gene,csabaeus_homolog_ensembl_gene,xtropicalis_homolog_ensembl_gene,drerio_homolog_ensembl_gene
 property.refseq=refseq_mrna,refseq_ncrna,refseq_peptide
 property.symbol=external_gene_name
-property.unigene=unigene
 property.uniprot=uniprotsptrembl,uniprotswissprot
 arrayDesign.A-AFFY-106=affy_cint06a520380f
 
diff --git a/annsrcs/ensembl/ciona_savignyi b/annsrcs/ensembl/ciona_savignyi
@@ -1,5 +1,5 @@
 software.name=ensembl
-software.version=92
+software.version=94
 url=http://www.ensembl.org/biomart/martservice?
 organism=ciona savignyi
 databaseName=ensembl
@@ -23,6 +23,5 @@ property.mirbase_accession=mirbase_accession
 property.mirbase_id=mirbase_id
 property.ortholog=acarolinensis_homolog_ensembl_gene,dnovemcinctus_homolog_ensembl_gene,cintestinalis_homolog_ensembl_gene,celegans_homolog_ensembl_gene,ggallus_homolog_ensembl_gene,ptroglodytes_homolog_ensembl_gene,btaurus_homolog_ensembl_gene,cfamiliaris_homolog_ensembl_gene,aplatyrhynchos_homolog_ensembl_gene,dmelanogaster_homolog_ensembl_gene,ggorilla_homolog_ensembl_gene,ecaballus_homolog_ensembl_gene,hsapiens_homolog_ensembl_gene,mmulatta_homolog_ensembl_gene,mmusculus_homolog_ensembl_gene,panubis_homolog_ensembl_gene,mdomestica_homolog_ensembl_gene,pabelii_homolog_ensembl_gene,sscrofa_homolog_ensembl_gene,oanatinus_homolog_ensembl_gene,ocuniculus_homolog_ensembl_gene,rnorvegicus_homolog_ensembl_gene,scerevisiae_homolog_ensembl_gene,oaries_homolog_ensembl_gene,tnigroviridis_homolog_ensembl_gene,csabaeus_homolog_ensembl_gene,xtropicalis_homolog_ensembl_gene,drerio_homolog_ensembl_gene
 property.symbol=external_gene_name
-property.unigene=unigene
 property.uniprot=uniprotsptrembl,uniprotswissprot
 
diff --git a/annsrcs/ensembl/corchorus_capsularis b/annsrcs/ensembl/corchorus_capsularis
@@ -1,5 +1,5 @@
 software.name=plants
-software.version=39
+software.version=41
 url=http://plants.ensembl.org/biomart/martservice?
 organism=corchorus capsularis
 databaseName=plants

diff --git a/annsrcs/ensembl/cyanidioschyzon_merolae b/annsrcs/ensembl/cyanidioschyzon_merolae
@@ -1,5 +1,5 @@
 software.name=plants
-software.version=39
+software.version=41
 url=http://plants.ensembl.org/biomart/martservice?
 organism=cyanidioschyzon merolae
 databaseName=plants

diff --git a/annsrcs/ensembl/danio_rerio b/annsrcs/ensembl/danio_rerio
@@ -1,5 +1,5 @@
 software.name=ensembl
-software.version=92
+software.version=94
 url=http://www.ensembl.org/biomart/martservice?
 organism=danio rerio
 databaseName=ensembl

diff --git a/annsrcs/ensembl/dasypus_novemcinctus b/annsrcs/ensembl/dasypus_novemcinctus
@@ -1,5 +1,5 @@
 software.name=ensembl
-software.version=92
+software.version=94
 url=http://www.ensembl.org/biomart/martservice?
 organism=dasypus novemcinctus
 databaseName=ensembl

diff --git a/annsrcs/ensembl/drosophila_melanogaster b/annsrcs/ensembl/drosophila_melanogaster
@@ -1,5 +1,5 @@
 software.name=metazoa
-software.version=39
+software.version=41
 url=http://metazoa.ensembl.org/biomart/martservice?
 organism=drosophila melanogaster
 databaseName=metazoa

diff --git a/annsrcs/ensembl/equus_caballus b/annsrcs/ensembl/equus_caballus
@@ -1,5 +1,5 @@
 software.name=ensembl
-software.version=92
+software.version=94
 url=http://www.ensembl.org/biomart/martservice?
 organism=equus caballus
 databaseName=ensembl
@@ -26,6 +26,5 @@ property.mirbase_id=mirbase_id
 property.ortholog=acarolinensis_homolog_ensembl_gene,dnovemcinctus_homolog_ensembl_gene,cintestinalis_homolog_ensembl_gene,csavignyi_homolog_ensembl_gene,celegans_homolog_ensembl_gene,ggallus_homolog_ensembl_gene,ptroglodytes_homolog_ensembl_gene,btaurus_homolog_ensembl_gene,cfamiliaris_homolog_ensembl_gene,aplatyrhynchos_homolog_ensembl_gene,dmelanogaster_homolog_ensembl_gene,ggorilla_homolog_ensembl_gene,hsapiens_homolog_ensembl_gene,mmulatta_homolog_ensembl_gene,mmusculus_homolog_ensembl_gene,panubis_homolog_ensembl_gene,mdomestica_homolog_ensembl_gene,pabelii_homolog_ensembl_gene,sscrofa_homolog_ensembl_gene,oanatinus_homolog_ensembl_gene,ocuniculus_homolog_ensembl_gene,rnorvegicus_homolog_ensembl_gene,scerevisiae_homolog_ensembl_gene,oaries_homolog_ensembl_gene,tnigroviridis_homolog_ensembl_gene,csabaeus_homolog_ensembl_gene,xtropicalis_homolog_ensembl_gene,drerio_homolog_ensembl_gene
 property.refseq=refseq_mrna,refseq_ncrna,refseq_peptide
 property.symbol=external_gene_name
-property.unigene=unigene
 property.uniprot=uniprotsptrembl,uniprotswissprot
 
diff --git a/annsrcs/ensembl/galdieria_sulphuraria b/annsrcs/ensembl/galdieria_sulphuraria
@@ -1,5 +1,5 @@
 software.name=plants
-software.version=39
+software.version=41
 url=http://plants.ensembl.org/biomart/martservice?
 organism=galdieria sulphuraria
 databaseName=plants

diff --git a/annsrcs/ensembl/gallus_gallus b/annsrcs/ensembl/gallus_gallus
@@ -1,5 +1,5 @@
 software.name=ensembl
-software.version=92
+software.version=94
 url=http://www.ensembl.org/biomart/martservice?
 organism=gallus gallus
 databaseName=ensembl
@@ -27,6 +27,5 @@ property.mirbase_id=mirbase_id
 property.ortholog=acarolinensis_homolog_ensembl_gene,dnovemcinctus_homolog_ensembl_gene,cintestinalis_homolog_ensembl_gene,csavignyi_homolog_ensembl_gene,celegans_homolog_ensembl_gene,ptroglodytes_homolog_ensembl_gene,btaurus_homolog_ensembl_gene,cfamiliaris_homolog_ensembl_gene,aplatyrhynchos_homolog_ensembl_gene,dmelanogaster_homolog_ensembl_gene,ggorilla_homolog_ensembl_gene,ecaballus_homolog_ensembl_gene,hsapiens_homolog_ensembl_gene,mmulatta_homolog_ensembl_gene,mmusculus_homolog_ensembl_gene,panubis_homolog_ensembl_gene,mdomestica_homolog_ensembl_gene,pabelii_homolog_ensembl_gene,sscrofa_homolog_ensembl_gene,oanatinus_homolog_ensembl_gene,ocuniculus_homolog_ensembl_gene,rnorvegicus_homolog_ensembl_gene,scerevisiae_homolog_ensembl_gene,oaries_homolog_ensembl_gene,tnigroviridis_homolog_ensembl_gene,csabaeus_homolog_ensembl_gene,xtropicalis_homolog_ensembl_gene,drerio_homolog_ensembl_gene
 property.refseq=refseq_mrna,refseq_ncrna,refseq_peptide
 property.symbol=external_gene_name
-property.unigene=unigene
 property.uniprot=uniprotsptrembl,uniprotswissprot
 arrayDesign.A-AFFY-103=affy_chicken
diff --git a/annsrcs/ensembl/glycine_max b/annsrcs/ensembl/glycine_max
@@ -1,5 +1,5 @@
 software.name=plants
-software.version=39
+software.version=41
 url=http://plants.ensembl.org/biomart/martservice?
 organism=glycine max
 databaseName=plants

diff --git a/annsrcs/ensembl/gorilla_gorilla b/annsrcs/ensembl/gorilla_gorilla
@@ -1,5 +1,5 @@
 software.name=ensembl
-software.version=92
+software.version=94
 url=http://www.ensembl.org/biomart/martservice?
 organism=gorilla gorilla
 databaseName=ensembl

diff --git a/annsrcs/ensembl/homo_sapiens b/annsrcs/ensembl/homo_sapiens
@@ -1,5 +1,5 @@
 software.name=ensembl
-software.version=92
+software.version=94
 url=http://www.ensembl.org/biomart/martservice?
 organism=homo sapiens
 databaseName=ensembl

diff --git a/annsrcs/ensembl/hordeum_vulgare b/annsrcs/ensembl/hordeum_vulgare
@@ -1,5 +1,5 @@
 software.name=plants
-software.version=39
+software.version=41
 url=http://plants.ensembl.org/biomart/martservice?
 organism=hordeum vulgare
 databaseName=plants

diff --git a/annsrcs/ensembl/leersia_perrieri b/annsrcs/ensembl/leersia_perrieri
@@ -1,5 +1,5 @@
 software.name=plants
-software.version=39
+software.version=41
 url=http://plants.ensembl.org/biomart/martservice?
 organism=leersia perrieri
 databaseName=plants

diff --git a/annsrcs/ensembl/macaca_mulatta b/annsrcs/ensembl/macaca_mulatta
@@ -1,5 +1,5 @@
 software.name=ensembl
-software.version=92
+software.version=94
 url=http://www.ensembl.org/biomart/martservice?
 organism=macaca mulatta
 databaseName=ensembl

diff --git a/annsrcs/ensembl/medicago_truncatula b/annsrcs/ensembl/medicago_truncatula
@@ -1,5 +1,5 @@
 software.name=plants
-software.version=39
+software.version=41
 url=http://plants.ensembl.org/biomart/martservice?
 organism=medicago truncatula
 databaseName=plants

diff --git a/annsrcs/ensembl/monodelphis_domestica b/annsrcs/ensembl/monodelphis_domestica
@@ -1,5 +1,5 @@
 software.name=ensembl
-software.version=92
+software.version=94
 url=http://www.ensembl.org/biomart/martservice?
 organism=monodelphis domestica
 databaseName=ensembl

diff --git a/annsrcs/ensembl/mus_musculus b/annsrcs/ensembl/mus_musculus
@@ -1,5 +1,5 @@
 software.name=ensembl
-software.version=92
+software.version=94
 url=http://www.ensembl.org/biomart/martservice?
 organism=mus musculus
 databaseName=ensembl

diff --git a/annsrcs/ensembl/musa_acuminata b/annsrcs/ensembl/musa_acuminata
@@ -1,5 +1,5 @@
 software.name=plants
-software.version=39
+software.version=41
 url=http://plants.ensembl.org/biomart/martservice?
 organism=musa acuminata
 databaseName=plants

diff --git a/annsrcs/ensembl/ornithorhynchus_anatinus b/annsrcs/ensembl/ornithorhynchus_anatinus
@@ -1,5 +1,5 @@
 software.name=ensembl
-software.version=92
+software.version=94
 url=http://www.ensembl.org/biomart/martservice?
 organism=ornithorhynchus anatinus
 databaseName=ensembl

diff --git a/annsrcs/ensembl/oryctolagus_cuniculus b/annsrcs/ensembl/oryctolagus_cuniculus
@@ -1,5 +1,5 @@
 software.name=ensembl
-software.version=92
+software.version=94
 url=http://www.ensembl.org/biomart/martservice?
 organism=oryctolagus cuniculus
 databaseName=ensembl

diff --git a/annsrcs/ensembl/oryza_barthii b/annsrcs/ensembl/oryza_barthii
@@ -1,5 +1,5 @@
 software.name=plants
-software.version=39
+software.version=41
 url=http://plants.ensembl.org/biomart/martservice?
 organism=oryza barthii
 databaseName=plants

diff --git a/annsrcs/ensembl/oryza_brachyantha b/annsrcs/ensembl/oryza_brachyantha
@@ -1,5 +1,5 @@
 software.name=plants
-software.version=39
+software.version=41
 url=http://plants.ensembl.org/biomart/martservice?
 organism=oryza brachyantha
 databaseName=plants

diff --git a/annsrcs/ensembl/oryza_glaberrima b/annsrcs/ensembl/oryza_glaberrima
@@ -1,5 +1,5 @@
 software.name=plants
-software.version=39
+software.version=41
 url=http://plants.ensembl.org/biomart/martservice?
 organism=oryza glaberrima
 databaseName=plants

diff --git a/annsrcs/ensembl/oryza_glumaepatula b/annsrcs/ensembl/oryza_glumaepatula
@@ -1,5 +1,5 @@
 software.name=plants
-software.version=39
+software.version=41
 url=http://plants.ensembl.org/biomart/martservice?
 organism=oryza glumaepatula
 databaseName=plants

diff --git a/annsrcs/ensembl/oryza_indica b/annsrcs/ensembl/oryza_indica
@@ -1,5 +1,5 @@
 software.name=plants
-software.version=39
+software.version=41
 url=http://plants.ensembl.org/biomart/martservice?
 organism=oryza indica
 databaseName=plants

diff --git a/annsrcs/ensembl/oryza_longistaminata b/annsrcs/ensembl/oryza_longistaminata
@@ -1,5 +1,5 @@
 software.name=plants
-software.version=39
+software.version=41
 url=http://plants.ensembl.org/biomart/martservice?
 organism=oryza longistaminata
 databaseName=plants

diff --git a/annsrcs/ensembl/oryza_meridionalis b/annsrcs/ensembl/oryza_meridionalis
@@ -1,5 +1,5 @@
 software.name=plants
-software.version=39
+software.version=41
 url=http://plants.ensembl.org/biomart/martservice?
 organism=oryza meridionalis
 databaseName=plants