Code

Split query database#93

Code

Merged

eaasna merged 23 commits intomaineaasna/valik:mainfrom split_queryeaasna/valik:split_queryCopy head branch name to clipboardSep 7, 2023

+2,043-1,029

Commits

Commits on Sep 7, 2023

• Rename reference_metadata -> sequence_metadata

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  2871a3c

• Make split metadata generic for reference and query databases

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• Write out query segments

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• Rename bins -> seg-count

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• Partial specialized template class approach

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• Use shared pointers over underlying sequences and create copies of query records

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  f198265

• Revert IBF index files

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• Rename reference_metadata -> sequence_metadata

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  f702b77

• Make split metadata generic for reference and query databases

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  890dc5c

• Write out query segments

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  62cd267

• Partial specialized template class approach

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  8b8b163

• Use shared pointers over underlying sequences and create copies of query records

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  af72d35

• Revert IBF index files

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• Missing include

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• Rename short_query_record -> shared_query_record

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• Missing include

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• [TEST] search over split queries

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• Default shared memory execution (instead of distributed)

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• Switch between compressed and uncompressed IBF

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• Missing include

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• Missing include

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• Fix

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• Missing include

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