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Repeat filtering: search in bins with highest entropy #121

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merged 8 commits into from
Nov 25, 2024
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@eaasna eaasna commented Oct 11, 2024

Normalizing the number of distinct minimisers per reference segment by segment length to use as a proxy for the sequence entropy within a bin

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codecov bot commented Oct 14, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 89.76%. Comparing base (2c35d37) to head (387e2ae).
Report is 9 commits behind head on main.

Additional details and impacted files
@@            Coverage Diff             @@
##             main     #121      +/-   ##
==========================================
- Coverage   94.44%   89.76%   -4.69%     
==========================================
  Files           2        5       +3     
  Lines          72      127      +55     
==========================================
+ Hits           68      114      +46     
- Misses          4       13       +9     

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@eaasna eaasna force-pushed the bin_entropy branch 2 times, most recently from 9aeeec2 to 0e189fd Compare October 14, 2024 15:43
@eaasna eaasna marked this pull request as ready for review November 25, 2024 15:15
@eaasna eaasna merged commit d5ecaef into main Nov 25, 2024
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@eaasna eaasna deleted the bin_entropy branch November 25, 2024 15:17
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