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[TEST] Test advanced Stellar parameters. NumMatches for query NOT for…
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… query-database pairs.
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@eaasna
eaasna committed Oct 27, 2023
1 parent 80d8529 commit 2e1a129
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Showing 28 changed files with 1,229 additions and 135 deletions.
13 changes: 13 additions & 0 deletions test/api/utilities/consolidate/CMakeLists.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -5,3 +5,16 @@ target_use_datasources (consolidate_matches_test FILES 16bins50overlap_dream_all
target_use_datasources (consolidate_matches_test FILES 8bins50overlap_reference_metadata.tsv)
target_use_datasources (consolidate_matches_test FILES 16bins50overlap_reference_metadata.tsv)
target_use_datasources (consolidate_matches_test FILES stellar_truth.gff)

target_use_datasources (consolidate_matches_test FILES stellar_truth_disable7_num3.gff)
target_use_datasources (consolidate_matches_test FILES stellar_truth_disable7_num5.gff)
target_use_datasources (consolidate_matches_test FILES stellar_truth_disable7_num9.gff)
target_use_datasources (consolidate_matches_test FILES stellar_truth_disable9_num3.gff)
target_use_datasources (consolidate_matches_test FILES stellar_truth_disable9_num5.gff)
target_use_datasources (consolidate_matches_test FILES stellar_truth_disable9_num9.gff)
target_use_datasources (consolidate_matches_test FILES stellar_truth_disable10_num3.gff)
target_use_datasources (consolidate_matches_test FILES stellar_truth_disable10_num5.gff)
target_use_datasources (consolidate_matches_test FILES stellar_truth_disable10_num9.gff)
target_use_datasources (consolidate_matches_test FILES stellar_truth_disable12_num3.gff)
target_use_datasources (consolidate_matches_test FILES stellar_truth_disable12_num5.gff)
target_use_datasources (consolidate_matches_test FILES stellar_truth_disable12_num9.gff)
54 changes: 54 additions & 0 deletions test/api/utilities/consolidate/consolidate_matches_test.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -86,3 +86,57 @@ TEST(consolidate_matches, bins16overlap50)

compare_gff_out(expected, actual);
}

TEST(consolidate_matches_with_options, bins8overlap50_with_options)
{
size_t number_of_bins = 8;
size_t segment_overlap = 50;

valik::search_arguments arguments{};
arguments.ref_meta_path = consolidation_meta_path(number_of_bins, segment_overlap);
arguments.all_matches = consolidation_input_path(number_of_bins, segment_overlap);
arguments.out_file = "consolidated.gff";

for (size_t d : std::vector<size_t>{7, 9, 10, 12})
{
for (size_t n : std::vector<size_t>{3, 5, 9})
{
arguments.disableThresh = d;
arguments.numMatches = n;
valik::consolidate_matches(arguments);

valik::metadata reference(arguments.ref_meta_path);
auto expected = valik::read_stellar_output(data_path("stellar_truth_disable" + std::to_string(d) + "_num" + std::to_string(n) + ".gff"), reference, std::ios::binary);
auto actual = valik::read_stellar_output("consolidated.gff", reference, std::ios::binary);

compare_gff_out(expected, actual);
}
}
}

TEST(consolidate_matches_with_options, bins16overlap50_with_options)
{
size_t number_of_bins = 16;
size_t segment_overlap = 50;

valik::search_arguments arguments{};
arguments.ref_meta_path = consolidation_meta_path(number_of_bins, segment_overlap);
arguments.all_matches = consolidation_input_path(number_of_bins, segment_overlap);
arguments.out_file = "consolidated.gff";

for (size_t d : std::vector<size_t>{7, 9, 10, 12})
{
for (size_t n : std::vector<size_t>{3, 5, 9})
{
arguments.disableThresh = d;
arguments.numMatches = n;
valik::consolidate_matches(arguments);

valik::metadata reference(arguments.ref_meta_path);
auto expected = valik::read_stellar_output(data_path("stellar_truth_disable" + std::to_string(d) + "_num" + std::to_string(n) + ".gff"), reference, std::ios::binary);
auto actual = valik::read_stellar_output("consolidated.gff", reference, std::ios::binary);

compare_gff_out(expected, actual);
}
}
}
2 changes: 0 additions & 2 deletions test/cli/CMakeLists.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -71,8 +71,6 @@ target_use_datasources (valik_test FILES 8bins23window1error100pattern1overlap.g
target_use_datasources (valik_test FILES 8bins23window1error100pattern40overlap.gff.out)
target_use_datasources (valik_test FILES query.fq)

target_use_datasources (valik_test FILES query_e0.06.fasta)

add_cli_test (dream_test.cpp)
target_use_datasources (dream_test FILES 16bins13window1error.gff)
target_use_datasources (dream_test FILES 16bins15window1error.gff)
Expand Down
148 changes: 116 additions & 32 deletions test/data/consolidate/16bins50overlap_dream_all.gff
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Large diffs are not rendered by default.

43 changes: 24 additions & 19 deletions test/data/consolidate/16bins50overlap_reference_metadata.tsv
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Original file line number Diff line number Diff line change
@@ -1,21 +1,26 @@
1 0 560
2 1 464
3 2 210
chr1 0 560
chr2 1 560
chr3 2 560
chr4 3 464
chr5 4 464
chr6 5 464
chr7 6 464
chr8 7 630
$
0 0 0 123
1 0 73 123
2 0 146 123
3 0 219 123
4 0 292 123
5 0 365 123
6 0 438 122
7 1 0 119
8 1 69 119
9 1 138 119
10 1 207 119
11 1 276 119
12 1 345 119
13 2 0 104
14 2 54 104
15 2 108 102
0 0 0 305
1 0 255 305
2 1 0 305
3 1 255 305
4 2 0 305
5 2 255 305
6 3 0 257
7 3 207 257
8 4 0 257
9 4 207 257
10 5 0 257
11 5 207 257
12 6 0 257
13 6 207 257
14 7 0 340
15 7 290 340
$
100 changes: 81 additions & 19 deletions test/data/consolidate/8bins50overlap_dream_all.gff
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Original file line number Diff line number Diff line change
@@ -1,19 +1,81 @@
1 Stellar eps-matches 126 307 94.0217 + . 1;seq2Range=204,384;eValue=4.05784e-73;cigar=2M1D2M1D171M2I1M1D3M;mutations=19A,24T,96G,159C,166A,170A,176A,177T
1 Stellar eps-matches 26 205 94.4444 + . 1;seq2Range=1199,1377;eValue=1.33385e-72;cigar=177M1D2M;mutations=2G,42T,56G,61T,107C,120A,137C,169T,172A
1 Stellar eps-matches 72 125 94.4444 + . 1;seq2Range=1640,1693;eValue=2.45585e-18;cigar=54M;mutations=3T,11G,27T
1 Stellar eps-matches 177 359 94.0217 + . 1;seq2Range=1807,1987;eValue=4.05784e-73;cigar=92M1D1M1I83M2D4M;mutations=54C,70A,84T,94G,109A,139C,150G,163C
1 Stellar eps-matches 126 307 94.0217 + . 1;seq2Range=204,384;eValue=4.05784e-73;cigar=2M1D2M1D171M2I1M1D3M;mutations=19A,24T,96G,159C,166A,170A,176A,177T
1 Stellar eps-matches 26 205 94.4444 + . 1;seq2Range=1199,1377;eValue=1.33385e-72;cigar=177M1D2M;mutations=2G,42T,56G,61T,107C,120A,137C,169T,172A
1 Stellar eps-matches 177 359 94.0217 + . 1;seq2Range=1807,1987;eValue=4.05784e-73;cigar=92M1D1M1I83M2D4M;mutations=54C,70A,84T,94G,109A,139C,150G,163C
1 Stellar eps-matches 126 307 94.0217 + . 1;seq2Range=204,384;eValue=4.05784e-73;cigar=2M1D2M1D171M2I1M1D3M;mutations=19A,24T,96G,159C,166A,170A,176A,177T
1 Stellar eps-matches 272 426 94.1935 + . 1;seq2Range=2107,2261;eValue=3.12561e-61;cigar=155M;mutations=3A,4G,8A,13A,23C,44C,52C,101C,138G
1 Stellar eps-matches 272 426 94.1935 + . 1;seq2Range=2107,2261;eValue=3.12561e-61;cigar=155M;mutations=3A,4G,8A,13A,23C,44C,52C,101C,138G
1 Stellar eps-matches 469 560 94.5652 + . 1;seq2Range=60,151;eValue=7.11652e-35;cigar=92M;mutations=15G,58C,60A,87A,90G
2 Stellar eps-matches 68 258 94.3005 + . 1;seq2Range=446,635;eValue=7.45606e-78;cigar=2M1I172M1I1M1D9M1D2M1D2M;mutations=3A,46C,63G,96C,105T,135G,168C,176C
2 Stellar eps-matches 18 147 94.6153 + . 1;seq2Range=1054,1183;eValue=1.69762e-51;cigar=130M;mutations=2C,14A,24A,35T,41T,54A,65G
2 Stellar eps-matches 148 202 94.7368 + . 1;seq2Range=912,968;eValue=5.69217e-20;cigar=52M1I2M1I1M;mutations=26A,53T,56T
2 Stellar eps-matches 187 386 94.0594 + . 1;seq2Range=662,863;eValue=5.91081e-81;cigar=193M1I4M1I3M;mutations=2T,21C,73G,81C,95C,113C,121T,189A,194A,197G,199T,200T
2 Stellar eps-matches 68 258 94.3005 + . 1;seq2Range=446,635;eValue=7.45606e-78;cigar=3M1I171M1I1M1D9M1D2M1D2M;mutations=4A,46C,63G,96C,105T,135G,168C,176C
2 Stellar eps-matches 148 202 94.7368 + . 1;seq2Range=912,968;eValue=5.69217e-20;cigar=53M1I1M1I1M;mutations=26A,54T,56T
2 Stellar eps-matches 187 386 94.0594 + . 1;seq2Range=662,863;eValue=5.91081e-81;cigar=193M1I4M1I3M;mutations=2T,21C,73G,81C,95C,113C,121T,189A,194A,197G,199T,200T
3 Stellar eps-matches 1 176 94.382 + . 1;seq2Range=686,863;eValue=5.12253e-72;cigar=169M1I4M1I3M;mutations=49G,57C,71C,89C,97T,165A,170A,173G,175T,176T
chr1 Stellar eps-matches 411 560 94.0397 + . 0_1;seq2Range=2,150;eValue=2.05928e-60;cigar=1D109M1I1M1D38M;mutations=28A,38A,69A,90A,110G,130G,139T
chr1 Stellar eps-matches 411 560 94.0397 + . 0_1;seq2Range=2,150;eValue=2.05928e-60;cigar=1M1D108M1I1M1D38M;mutations=28A,38A,69A,90A,110G,130G,139T
chr1 Stellar eps-matches 411 560 94.0397 + . 0_2;seq2Range=2,150;eValue=2.05928e-60;cigar=1D109M1I1M1D38M;mutations=28A,38A,69A,90A,110G,130G,139T
chr1 Stellar eps-matches 411 560 94.0397 + . 0_2;seq2Range=2,150;eValue=2.05928e-60;cigar=1M1D108M1I1M1D38M;mutations=28A,38A,69A,90A,110G,130G,139T
chr1 Stellar eps-matches 411 560 94.0397 + . 0_3;seq2Range=2,150;eValue=2.05928e-60;cigar=1D109M1I1M1D38M;mutations=28A,38A,69A,90A,110G,130G,139T
chr1 Stellar eps-matches 411 560 94.0397 + . 0_3;seq2Range=2,150;eValue=2.05928e-60;cigar=1M1D108M1I1M1D38M;mutations=28A,38A,69A,90A,110G,130G,139T
chr1 Stellar eps-matches 110 259 94 - . 1_1;seq2Range=1,150;eValue=6.76902e-60;cigar=150M;mutations=7C,41A,52G,59T,61A,103T,108G,128A,148T
chr1 Stellar eps-matches 110 259 94 - . 1_2;seq2Range=1,150;eValue=6.76902e-60;cigar=150M;mutations=7C,41A,52G,59T,61A,103T,108G,128A,148T
chr1 Stellar eps-matches 110 259 94 - . 1_3;seq2Range=1,150;eValue=6.76902e-60;cigar=150M;mutations=7C,41A,52G,59T,61A,103T,108G,128A,148T
chr2 Stellar eps-matches 411 560 94.0397 + . 0_1;seq2Range=2,150;eValue=2.05928e-60;cigar=1D109M1I1M1D38M;mutations=28A,38A,69A,90A,110G,130G,139T
chr2 Stellar eps-matches 411 560 94.0397 + . 0_1;seq2Range=2,150;eValue=2.05928e-60;cigar=1M1D108M1I1M1D38M;mutations=28A,38A,69A,90A,110G,130G,139T
chr2 Stellar eps-matches 411 560 94.0397 + . 0_2;seq2Range=2,150;eValue=2.05928e-60;cigar=1D109M1I1M1D38M;mutations=28A,38A,69A,90A,110G,130G,139T
chr2 Stellar eps-matches 411 560 94.0397 + . 0_2;seq2Range=2,150;eValue=2.05928e-60;cigar=1M1D108M1I1M1D38M;mutations=28A,38A,69A,90A,110G,130G,139T
chr2 Stellar eps-matches 411 560 94.0397 + . 0_3;seq2Range=2,150;eValue=2.05928e-60;cigar=1D109M1I1M1D38M;mutations=28A,38A,69A,90A,110G,130G,139T
chr2 Stellar eps-matches 411 560 94.0397 + . 0_3;seq2Range=2,150;eValue=2.05928e-60;cigar=1M1D108M1I1M1D38M;mutations=28A,38A,69A,90A,110G,130G,139T
chr2 Stellar eps-matches 110 259 94 - . 1_1;seq2Range=1,150;eValue=6.76902e-60;cigar=150M;mutations=7C,41A,52G,59T,61A,103T,108G,128A,148T
chr2 Stellar eps-matches 110 259 94 - . 1_2;seq2Range=1,150;eValue=6.76902e-60;cigar=150M;mutations=7C,41A,52G,59T,61A,103T,108G,128A,148T
chr2 Stellar eps-matches 110 259 94 - . 1_3;seq2Range=1,150;eValue=6.76902e-60;cigar=150M;mutations=7C,41A,52G,59T,61A,103T,108G,128A,148T
chr3 Stellar eps-matches 411 560 94.0397 + . 0_1;seq2Range=2,150;eValue=2.05928e-60;cigar=1D109M1I1M1D38M;mutations=28A,38A,69A,90A,110G,130G,139T
chr3 Stellar eps-matches 411 560 94.0397 + . 0_1;seq2Range=2,150;eValue=2.05928e-60;cigar=1M1D108M1I1M1D38M;mutations=28A,38A,69A,90A,110G,130G,139T
chr3 Stellar eps-matches 411 560 94.0397 + . 0_2;seq2Range=2,150;eValue=2.05928e-60;cigar=1D109M1I1M1D38M;mutations=28A,38A,69A,90A,110G,130G,139T
chr3 Stellar eps-matches 411 560 94.0397 + . 0_2;seq2Range=2,150;eValue=2.05928e-60;cigar=1M1D108M1I1M1D38M;mutations=28A,38A,69A,90A,110G,130G,139T
chr3 Stellar eps-matches 411 560 94.0397 + . 0_3;seq2Range=2,150;eValue=2.05928e-60;cigar=1D109M1I1M1D38M;mutations=28A,38A,69A,90A,110G,130G,139T
chr3 Stellar eps-matches 411 560 94.0397 + . 0_3;seq2Range=2,150;eValue=2.05928e-60;cigar=1M1D108M1I1M1D38M;mutations=28A,38A,69A,90A,110G,130G,139T
chr3 Stellar eps-matches 110 259 94 - . 1_1;seq2Range=1,150;eValue=6.76902e-60;cigar=150M;mutations=7C,41A,52G,59T,61A,103T,108G,128A,148T
chr3 Stellar eps-matches 110 259 94 - . 1_2;seq2Range=1,150;eValue=6.76902e-60;cigar=150M;mutations=7C,41A,52G,59T,61A,103T,108G,128A,148T
chr3 Stellar eps-matches 110 259 94 - . 1_3;seq2Range=1,150;eValue=6.76902e-60;cigar=150M;mutations=7C,41A,52G,59T,61A,103T,108G,128A,148T
chr4 Stellar eps-matches 174 324 94.0397 + . 0_4;seq2Range=1,150;eValue=1.69654e-60;cigar=1D150M;mutations=23G,48T,114G,118A,126C,131A,136C,138T
chr4 Stellar eps-matches 175 325 94.0397 + . 0_4;seq2Range=1,150;eValue=1.69654e-60;cigar=148M1D2M;mutations=23G,48T,114G,118A,126C,131A,136C,138T
chr4 Stellar eps-matches 174 324 94.0397 + . 0_5;seq2Range=1,150;eValue=1.69654e-60;cigar=1D150M;mutations=23G,48T,114G,118A,126C,131A,136C,138T
chr4 Stellar eps-matches 175 325 94.0397 + . 0_5;seq2Range=1,150;eValue=1.69654e-60;cigar=148M1D2M;mutations=23G,48T,114G,118A,126C,131A,136C,138T
chr4 Stellar eps-matches 174 324 94.0397 + . 0_6;seq2Range=1,150;eValue=1.69654e-60;cigar=1D150M;mutations=23G,48T,114G,118A,126C,131A,136C,138T
chr4 Stellar eps-matches 175 325 94.0397 + . 0_6;seq2Range=1,150;eValue=1.69654e-60;cigar=148M1D2M;mutations=23G,48T,114G,118A,126C,131A,136C,138T
chr4 Stellar eps-matches 174 324 94.0397 + . 0_7;seq2Range=1,150;eValue=1.69654e-60;cigar=1D150M;mutations=23G,48T,114G,118A,126C,131A,136C,138T
chr4 Stellar eps-matches 175 325 94.0397 + . 0_7;seq2Range=1,150;eValue=1.69654e-60;cigar=148M1D2M;mutations=23G,48T,114G,118A,126C,131A,136C,138T
chr4 Stellar eps-matches 140 289 94 - . 1_4;seq2Range=1,150;eValue=5.57668e-60;cigar=150M;mutations=4T,12C,35A,47C,57G,100A,104G,109T,114A
chr4 Stellar eps-matches 140 289 94 - . 1_5;seq2Range=1,150;eValue=5.57668e-60;cigar=150M;mutations=4T,12C,35A,47C,57G,100A,104G,109T,114A
chr4 Stellar eps-matches 140 289 94 - . 1_6;seq2Range=1,150;eValue=5.57668e-60;cigar=150M;mutations=4T,12C,35A,47C,57G,100A,104G,109T,114A
chr4 Stellar eps-matches 140 289 94 - . 1_7;seq2Range=1,150;eValue=5.57668e-60;cigar=150M;mutations=4T,12C,35A,47C,57G,100A,104G,109T,114A
chr5 Stellar eps-matches 174 324 94.0397 + . 0_4;seq2Range=1,150;eValue=1.69654e-60;cigar=1D150M;mutations=23G,48T,114G,118A,126C,131A,136C,138T
chr5 Stellar eps-matches 175 325 94.0397 + . 0_4;seq2Range=1,150;eValue=1.69654e-60;cigar=148M1D2M;mutations=23G,48T,114G,118A,126C,131A,136C,138T
chr5 Stellar eps-matches 174 324 94.0397 + . 0_5;seq2Range=1,150;eValue=1.69654e-60;cigar=1D150M;mutations=23G,48T,114G,118A,126C,131A,136C,138T
chr5 Stellar eps-matches 175 325 94.0397 + . 0_5;seq2Range=1,150;eValue=1.69654e-60;cigar=148M1D2M;mutations=23G,48T,114G,118A,126C,131A,136C,138T
chr5 Stellar eps-matches 174 324 94.0397 + . 0_6;seq2Range=1,150;eValue=1.69654e-60;cigar=1D150M;mutations=23G,48T,114G,118A,126C,131A,136C,138T
chr5 Stellar eps-matches 175 325 94.0397 + . 0_6;seq2Range=1,150;eValue=1.69654e-60;cigar=148M1D2M;mutations=23G,48T,114G,118A,126C,131A,136C,138T
chr5 Stellar eps-matches 174 324 94.0397 + . 0_7;seq2Range=1,150;eValue=1.69654e-60;cigar=1D150M;mutations=23G,48T,114G,118A,126C,131A,136C,138T
chr5 Stellar eps-matches 175 325 94.0397 + . 0_7;seq2Range=1,150;eValue=1.69654e-60;cigar=148M1D2M;mutations=23G,48T,114G,118A,126C,131A,136C,138T
chr5 Stellar eps-matches 140 289 94 - . 1_4;seq2Range=1,150;eValue=5.57668e-60;cigar=150M;mutations=4T,12C,35A,47C,57G,100A,104G,109T,114A
chr5 Stellar eps-matches 140 289 94 - . 1_5;seq2Range=1,150;eValue=5.57668e-60;cigar=150M;mutations=4T,12C,35A,47C,57G,100A,104G,109T,114A
chr5 Stellar eps-matches 140 289 94 - . 1_6;seq2Range=1,150;eValue=5.57668e-60;cigar=150M;mutations=4T,12C,35A,47C,57G,100A,104G,109T,114A
chr5 Stellar eps-matches 140 289 94 - . 1_7;seq2Range=1,150;eValue=5.57668e-60;cigar=150M;mutations=4T,12C,35A,47C,57G,100A,104G,109T,114A
chr6 Stellar eps-matches 174 324 94.0397 + . 0_4;seq2Range=1,150;eValue=1.69654e-60;cigar=1D150M;mutations=23G,48T,114G,118A,126C,131A,136C,138T
chr6 Stellar eps-matches 175 325 94.0397 + . 0_4;seq2Range=1,150;eValue=1.69654e-60;cigar=148M1D2M;mutations=23G,48T,114G,118A,126C,131A,136C,138T
chr6 Stellar eps-matches 174 324 94.0397 + . 0_5;seq2Range=1,150;eValue=1.69654e-60;cigar=1D150M;mutations=23G,48T,114G,118A,126C,131A,136C,138T
chr6 Stellar eps-matches 175 325 94.0397 + . 0_5;seq2Range=1,150;eValue=1.69654e-60;cigar=148M1D2M;mutations=23G,48T,114G,118A,126C,131A,136C,138T
chr6 Stellar eps-matches 174 324 94.0397 + . 0_6;seq2Range=1,150;eValue=1.69654e-60;cigar=1D150M;mutations=23G,48T,114G,118A,126C,131A,136C,138T
chr6 Stellar eps-matches 175 325 94.0397 + . 0_6;seq2Range=1,150;eValue=1.69654e-60;cigar=148M1D2M;mutations=23G,48T,114G,118A,126C,131A,136C,138T
chr6 Stellar eps-matches 174 324 94.0397 + . 0_7;seq2Range=1,150;eValue=1.69654e-60;cigar=1D150M;mutations=23G,48T,114G,118A,126C,131A,136C,138T
chr6 Stellar eps-matches 175 325 94.0397 + . 0_7;seq2Range=1,150;eValue=1.69654e-60;cigar=148M1D2M;mutations=23G,48T,114G,118A,126C,131A,136C,138T
chr6 Stellar eps-matches 140 289 94 - . 1_4;seq2Range=1,150;eValue=5.57668e-60;cigar=150M;mutations=4T,12C,35A,47C,57G,100A,104G,109T,114A
chr6 Stellar eps-matches 140 289 94 - . 1_5;seq2Range=1,150;eValue=5.57668e-60;cigar=150M;mutations=4T,12C,35A,47C,57G,100A,104G,109T,114A
chr6 Stellar eps-matches 140 289 94 - . 1_6;seq2Range=1,150;eValue=5.57668e-60;cigar=150M;mutations=4T,12C,35A,47C,57G,100A,104G,109T,114A
chr6 Stellar eps-matches 140 289 94 - . 1_7;seq2Range=1,150;eValue=5.57668e-60;cigar=150M;mutations=4T,12C,35A,47C,57G,100A,104G,109T,114A
chr7 Stellar eps-matches 174 324 94.0397 + . 0_4;seq2Range=1,150;eValue=1.69654e-60;cigar=1D150M;mutations=23G,48T,114G,118A,126C,131A,136C,138T
chr7 Stellar eps-matches 175 325 94.0397 + . 0_4;seq2Range=1,150;eValue=1.69654e-60;cigar=148M1D2M;mutations=23G,48T,114G,118A,126C,131A,136C,138T
chr7 Stellar eps-matches 174 324 94.0397 + . 0_5;seq2Range=1,150;eValue=1.69654e-60;cigar=1D150M;mutations=23G,48T,114G,118A,126C,131A,136C,138T
chr7 Stellar eps-matches 175 325 94.0397 + . 0_5;seq2Range=1,150;eValue=1.69654e-60;cigar=148M1D2M;mutations=23G,48T,114G,118A,126C,131A,136C,138T
chr7 Stellar eps-matches 174 324 94.0397 + . 0_6;seq2Range=1,150;eValue=1.69654e-60;cigar=1D150M;mutations=23G,48T,114G,118A,126C,131A,136C,138T
chr7 Stellar eps-matches 175 325 94.0397 + . 0_6;seq2Range=1,150;eValue=1.69654e-60;cigar=148M1D2M;mutations=23G,48T,114G,118A,126C,131A,136C,138T
chr7 Stellar eps-matches 174 324 94.0397 + . 0_7;seq2Range=1,150;eValue=1.69654e-60;cigar=1D150M;mutations=23G,48T,114G,118A,126C,131A,136C,138T
chr7 Stellar eps-matches 175 325 94.0397 + . 0_7;seq2Range=1,150;eValue=1.69654e-60;cigar=148M1D2M;mutations=23G,48T,114G,118A,126C,131A,136C,138T
chr7 Stellar eps-matches 140 289 94 - . 1_4;seq2Range=1,150;eValue=5.57668e-60;cigar=150M;mutations=4T,12C,35A,47C,57G,100A,104G,109T,114A
chr7 Stellar eps-matches 140 289 94 - . 1_5;seq2Range=1,150;eValue=5.57668e-60;cigar=150M;mutations=4T,12C,35A,47C,57G,100A,104G,109T,114A
chr7 Stellar eps-matches 140 289 94 - . 1_6;seq2Range=1,150;eValue=5.57668e-60;cigar=150M;mutations=4T,12C,35A,47C,57G,100A,104G,109T,114A
chr7 Stellar eps-matches 140 289 94 - . 1_7;seq2Range=1,150;eValue=5.57668e-60;cigar=150M;mutations=4T,12C,35A,47C,57G,100A,104G,109T,114A
chr8 Stellar eps-matches 39 188 94 + . 0_8;seq2Range=1,150;eValue=7.63844e-60;cigar=150M;mutations=2T,10G,23C,42C,68A,87C,113A,136A,142T
chr8 Stellar eps-matches 249 398 94 + . 0_8;seq2Range=1,150;eValue=7.63844e-60;cigar=150M;mutations=2T,10G,23C,42C,68A,87C,113A,136A,142T
chr8 Stellar eps-matches 459 608 94 + . 0_8;seq2Range=1,150;eValue=7.63844e-60;cigar=150M;mutations=2T,10G,23C,42C,68A,87C,113A,136A,142T
chr8 Stellar eps-matches 473 624 94.0789 - . 1_8;seq2Range=1,150;eValue=7.06942e-61;cigar=1D3M1D147M;mutations=7T,15G,32G,67A,81C,105C,113T
chr8 Stellar eps-matches 263 414 94.0789 - . 1_8;seq2Range=1,150;eValue=7.06942e-61;cigar=1D3M1D147M;mutations=7T,15G,32G,67A,81C,105C,113T
chr8 Stellar eps-matches 53 204 94.0789 - . 1_8;seq2Range=1,150;eValue=7.06942e-61;cigar=1D3M1D147M;mutations=7T,15G,32G,67A,81C,105C,113T
27 changes: 16 additions & 11 deletions test/data/consolidate/8bins50overlap_reference_metadata.tsv
View file
Original file line number Diff line number Diff line change
@@ -1,13 +1,18 @@
1 0 560
2 1 464
3 2 210
chr1 0 560
chr2 1 560
chr3 2 560
chr4 3 464
chr5 4 464
chr6 5 464
chr7 6 464
chr8 7 630
$
0 0 0 178
1 0 128 178
2 0 256 178
3 0 384 176
4 1 0 188
5 1 138 188
6 1 276 188
7 2 0 210
0 0 0 560
1 1 0 560
2 2 0 560
3 3 0 464
4 4 0 464
5 5 0 464
6 6 0 464
7 7 0 630
$
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