Search vs consolidation time #207
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI on Linux | |
| on: | |
| push: | |
| branches: | |
| - 'main' | |
| pull_request: | |
| workflow_dispatch: | |
| concurrency: | |
| group: coverage-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: ${{ github.event_name != 'push' }} | |
| env: | |
| CMAKE_VERSION: 3.16.9 | |
| SEQAN3_NO_VERSION_CHECK: 1 | |
| SHARG_NO_VERSION_CHECK: 1 | |
| TZ: Europe/Berlin | |
| defaults: | |
| run: | |
| shell: bash -ex {0} | |
| jobs: | |
| build: | |
| name: ${{ matrix.name }} | |
| runs-on: ubuntu-22.04 | |
| timeout-minutes: 120 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - name: "Coverage gcc12" | |
| cxx: "g++-12" | |
| cc: "gcc-12" | |
| build_type: Coverage | |
| cxx_flags: "-std=c++23" | |
| steps: | |
| - name: Set repository name | |
| run: echo "REPOSITORY_NAME=$(echo '${{ github.repository }}' | awk -F '/' '{print $2}')" >> $GITHUB_ENV | |
| # How many commits do we need to fetch to also fetch the branch point? | |
| - name: Get fetch depth | |
| id: fetch_depth | |
| run: echo "depth=$(( ${{ github.event.pull_request.commits }} + 2 ))" >> $GITHUB_OUTPUT | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| path: ${{ env.REPOSITORY_NAME }} | |
| fetch-depth: ${{ steps.fetch_depth.outputs.depth }} | |
| submodules: recursive | |
| - name: Add package source | |
| run: bash ./${{ env.REPOSITORY_NAME }}/lib/seqan3/.github/workflows/scripts/configure_apt.sh | |
| - name: Install CMake | |
| run: bash ./${{ env.REPOSITORY_NAME }}/lib/seqan3/.github/workflows/scripts/install_cmake.sh | |
| - name: Install ccache | |
| run: | | |
| conda install --yes --override-channels --channel conda-forge ccache | |
| sudo ln -s $CONDA/bin/ccache /usr/bin/ccache | |
| - name: Install compiler ${{ matrix.cxx }} | |
| run: sudo apt-get install --yes ${{ matrix.cxx }} | |
| - name: Install gcovr | |
| env: | |
| CC: ${{ matrix.cc }} | |
| run: | | |
| sudo update-alternatives --install /usr/bin/gcov gcov /usr/bin/${CC/gcc/gcov} 100 | |
| pip install gcovr==5.0 | |
| - name: Load ccache | |
| uses: actions/cache@v3 | |
| with: | |
| path: .ccache | |
| key: ${{ runner.os }}-${{ matrix.name }}-ccache-${{ github.ref }}-${{ github.run_number }} | |
| # Restoring: From current branch, otherwise from base branch, otherwise from any branch. | |
| restore-keys: | | |
| ${{ runner.os }}-${{ matrix.name }}-ccache-${{ github.ref }} | |
| ${{ runner.os }}-${{ matrix.name }}-ccache-${{ github.base_ref }} | |
| ${{ runner.os }}-${{ matrix.name }}-ccache- | |
| - name: Tool versions | |
| run: | | |
| env cmake --version | |
| env ${{ matrix.cxx }} --version | |
| - name: Configure tests | |
| env: | |
| CXX: ${{ matrix.cxx }} | |
| CC: ${{ matrix.cc }} | |
| run: | | |
| mkdir build | |
| cd build | |
| cmake ../${{ env.REPOSITORY_NAME }} -DCMAKE_BUILD_TYPE=${{ matrix.build_type }} \ | |
| -DCMAKE_CXX_FLAGS="${{ matrix.cxx_flags }} -Wno-interference-size" | |
| make -j2 gtest_build | |
| - name: Build application | |
| env: | |
| CCACHE_BASEDIR: ${{ github.workspace }} | |
| CCACHE_DIR: ${{ github.workspace }}/.ccache | |
| CCACHE_COMPRESS: true | |
| CCACHE_COMPRESSLEVEL: 12 | |
| CCACHE_MAXSIZE: 525M | |
| CCACHE_IGNOREOPTIONS: "-fprofile-abs-path" | |
| run: | | |
| ccache -z | |
| cd build | |
| make -k -j2 | |
| ccache -sv | |
| - name: Build tests | |
| env: | |
| CCACHE_BASEDIR: ${{ github.workspace }} | |
| CCACHE_DIR: ${{ github.workspace }}/.ccache | |
| CCACHE_COMPRESS: true | |
| CCACHE_COMPRESSLEVEL: 12 | |
| CCACHE_MAXSIZE: 525M | |
| CCACHE_IGNOREOPTIONS: "-fprofile-abs-path" | |
| run: | | |
| ccache -z | |
| cd build | |
| make -k -j2 api_test cli_test | |
| ccache -sv | |
| - name: Run tests | |
| run: | | |
| cd build | |
| ctest . -j2 --output-on-failure | |
| - name: Generate coverage report | |
| run: | | |
| gcovr --gcov-executable ${{ github.workspace }}/${{ env.REPOSITORY_NAME }}/lib/seqan3/.github/workflows/scripts/gcov.sh \ | |
| --root ${{ github.workspace }}/${{ env.REPOSITORY_NAME }}/test/coverage \ | |
| ${{ github.workspace }}/build \ | |
| --filter ${{ github.workspace }}/${{ env.REPOSITORY_NAME }}/include \ | |
| --filter ${{ github.workspace }}/${{ env.REPOSITORY_NAME }}/src \ | |
| --exclude-lines-by-pattern '^\s*$' \ | |
| --exclude-lines-by-pattern '^\s*};$' \ | |
| --exclude-lines-by-pattern '^.*GCOVR_EXCL_LINE.*$' \ | |
| --exclude-unreachable-branches \ | |
| --exclude-throw-branches \ | |
| -j 2 \ | |
| --xml \ | |
| --output ${{ github.workspace }}/build/coverage_report.xml | |
| - name: Submit coverage report | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| files: ${{ github.workspace }}/build/coverage_report.xml | |
| root_dir: ${{ github.workspace }}/${{ env.REPOSITORY_NAME }} | |