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@eMetaboHUB

French national infrastructure in metabolomics & fluxomics

Public repository for metabolomics & fluxomics tools by METABOHUB
readme.md

Welcome to our public repository for metabolomics & fluxomics tools by MetaboHUB

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Please find all our public codes, projects and best practices from the MetaboHUB national infrastructure.

Public code repositories

  • Discovery - eases sparql request
  • Forum - DiseasesChem - a Knowledge Graph from public databases and scientific literature to extract associations between chemicals and diseases.
  • MetExplore/Met4J - an open-source Java library dedicated to the structural analysis of metabolic networks.
  • Metasaurus - ontology for metabolomics studies and objects
  • PeakForest - The MetaboHUB's spectral database
  • MAMA - The Metabolomics Analysis MAnager project

Documentation and best practices

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Popular repositories Loading

  1. MS-CleanR MS-CleanR Public archive

    R 25 8

  2. Forum-DiseasesChem Forum-DiseasesChem Public

    A Knowledge Graph from public databases and scientific literature to extract associations between chemicals and diseases.

    Python 16 6

  3. FragHub FragHub Public

    Python 11

  4. Forum-LiteraturePropagation Forum-LiteraturePropagation Public

    Python 2

  5. metabolomics2network-discovery metabolomics2network-discovery Public

    ScalaJs implementation based of "Improving lipid mapping in Genome Scale Metabolic Networks using ontologies."

    Scala 1

  6. SBML2RDF SBML2RDF Public

    SBML to RDF conversion

    Java 1

Repositories

Showing 10 of 10 repositories
  • FragHub Public
    eMetaboHUB/FragHub’s past year of commit activity
    Python 11 MIT 0 2 0 Updated Dec 20, 2024
  • SBML2RDF Public

    SBML to RDF conversion

    eMetaboHUB/SBML2RDF’s past year of commit activity
    Java 1 0 0 0 Updated Jul 22, 2024
  • Forum-DiseasesChem Public

    A Knowledge Graph from public databases and scientific literature to extract associations between chemicals and diseases.

    eMetaboHUB/Forum-DiseasesChem’s past year of commit activity
    Python 16 6 5 0 Updated Jul 9, 2024
  • MSDDBM Public

    Tools for the Metabolomic Semantic Datalake project

    eMetaboHUB/MSDDBM’s past year of commit activity
    Scala 0 GPL-3.0 0 0 0 Updated Jun 20, 2024
  • docker-XcmsViewer Public Forked from p2m2/docker-XcmsViewer

    Dockerized XcmsViewer

    eMetaboHUB/docker-XcmsViewer’s past year of commit activity
    R 1 GPL-3.0 2 0 0 Updated Feb 19, 2024
  • .github Public

    Show-cases of MTH infrastructure

    eMetaboHUB/.github’s past year of commit activity
    Dockerfile 0 0 0 2 Updated Feb 16, 2024
  • MS-CleanR Public archive
    eMetaboHUB/MS-CleanR’s past year of commit activity
    R 25 8 0 1 Updated Nov 30, 2023
  • Discovery Public Forked from p2m2/discovery

    a powerful toolset to build UIs using RDF data in an a robust software development process

    eMetaboHUB/Discovery’s past year of commit activity
    Scala 0 MIT 1 0 0 Updated Sep 25, 2023
  • Forum-LiteraturePropagation Public
    eMetaboHUB/Forum-LiteraturePropagation’s past year of commit activity
    Python 2 0 0 0 Updated May 18, 2023
  • metabolomics2network-discovery Public

    ScalaJs implementation based of "Improving lipid mapping in Genome Scale Metabolic Networks using ontologies."

    eMetaboHUB/metabolomics2network-discovery’s past year of commit activity
    Scala 1 0 0 0 Updated Apr 12, 2023

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