Providing the absolute human stemness index based on the gene pairs.This classifier is limited to the data measured by RNA-seq or Illumina platform.
To install the StemnessIndex, install from github using devtools
library(devtools)
install_github("Hailong-Zheng/StemnessIndexs")
Or you can download the .ZIP file and and unzip it.
install.packages("StemnessIndex",repos = NULL,type="source")
#The "StemnessIndex" should be combined with the absolute path.
library(StemnessIndex)
data(example)
label=StemnessIndex(exp)
The example is the gene expression profile of GSE85331 from database Gene Expression Omnibus (GEO)
Exp, a dataframe with gene expression profiles data values, samples in columns, genes in rows, rownames corresponding to Entrez IDs. The StemnessIndex can be well applied to Illumina Array data and RNA-seq data (RPKM).
Please don't hesitate to address comments/questions/suggestions regarding this R package to: [email protected]