awesome-benchmark-datasets

This wants to be a community maintained repository for collecting omics datasets resources to be used as benchmark and other applications.

Any contribution is really appreciated.

At the moment we distinguish these sections:

• Single Cell

Single Cell

scRNAseq

scRNAseq
YYYY	scRNAseq	Collection of scRNAseq datasets	Risso D, Cole M (2022)
2018	DuoClustering2018	Collection of scRNAseq datasets used for benchmarking clustering methods	See references in Duo et al (2018)

High-dimensional cytometry

HDCyto
2019	HDCytoData	Collection of experimental and semi-simulated high-dimensional cytometry datasets used for benchmarking clustering and differential abundance methods	See references in Weber and Soneson (2019)

Reference datasets

Reference Dataset
2019	celldex	reference datasets for cell-type annotations	Aran D. et al. 2019